miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 201195 0.73 0.725243
Target:  5'- gCACCGcuUCGUCa-GCUCGucGCGCAGg -3'
miRNA:   3'- aGUGGC--AGCAGgcCGAGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 196732 0.66 0.977373
Target:  5'- cCGCuuCGUCGUCCuguacGGCUCGAccggcGGCGUg- -3'
miRNA:   3'- aGUG--GCAGCAGG-----CCGAGCU-----UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 196394 0.7 0.862847
Target:  5'- aCGCCGcggGUCUGGCgcgGGGACGCGGg -3'
miRNA:   3'- aGUGGCag-CAGGCCGag-CUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 196264 0.7 0.862847
Target:  5'- gUCACCG--GUCgCGGCg-GAAGCGCGGa -3'
miRNA:   3'- -AGUGGCagCAG-GCCGagCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 196159 0.68 0.930794
Target:  5'- uUCACCGgCGUCCGGaucCGcaAGACGCu- -3'
miRNA:   3'- -AGUGGCaGCAGGCCga-GC--UUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 193952 0.67 0.948904
Target:  5'- ---aCGUCGUCUGGCgCGAGAgGCc- -3'
miRNA:   3'- agugGCAGCAGGCCGaGCUUUgCGuc -5'
9120 5' -55.4 NC_002512.2 + 192783 0.74 0.637274
Target:  5'- gUCACCGUCGUgCGGCgCGGgcacAACGCc- -3'
miRNA:   3'- -AGUGGCAGCAgGCCGaGCU----UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 192407 0.66 0.966699
Target:  5'- uUUACCGUccuuccgacgCGUCCGGuCUCGuucuuccccCGCGGg -3'
miRNA:   3'- -AGUGGCA----------GCAGGCC-GAGCuuu------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 190216 0.66 0.972407
Target:  5'- gCGCgGUCGUCCGGgaCGGccACGUc- -3'
miRNA:   3'- aGUGgCAGCAGGCCgaGCUu-UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 190167 0.67 0.948904
Target:  5'- uUCACCGUCGUcgacCCGauccGCUCGccccGGCuGCAGa -3'
miRNA:   3'- -AGUGGCAGCA----GGC----CGAGCu---UUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 189632 0.66 0.977373
Target:  5'- -gAUCGUCGcggUCGGCuucgUCGGGACGCGc -3'
miRNA:   3'- agUGGCAGCa--GGCCG----AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 189273 0.66 0.969649
Target:  5'- aCGUCGagGUCCGGcCUCGcgGCGCGu -3'
miRNA:   3'- aGUGGCagCAGGCC-GAGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 188916 0.7 0.870078
Target:  5'- gCGCgGUCGgagagucCCGGUggCGggGCGCGGc -3'
miRNA:   3'- aGUGgCAGCa------GGCCGa-GCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 185996 0.66 0.97214
Target:  5'- gUCGCCGuggugggUCGUCCGGCaccuGGACGCc- -3'
miRNA:   3'- -AGUGGC-------AGCAGGCCGagc-UUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 185470 0.67 0.944707
Target:  5'- uUCGCCGUgGUCCuGC-CGc--CGCAGg -3'
miRNA:   3'- -AGUGGCAgCAGGcCGaGCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 184000 0.67 0.952883
Target:  5'- cUCcCCGUCGUCCGGUUagaGAAguucuACGUc- -3'
miRNA:   3'- -AGuGGCAGCAGGCCGAg--CUU-----UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 181447 0.66 0.972407
Target:  5'- aUCACCGUCGucuucgucaggaUCCGG-UCGAAguccGgGUAGg -3'
miRNA:   3'- -AGUGGCAGC------------AGGCCgAGCUU----UgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 179297 0.69 0.903151
Target:  5'- gCACCGUCcaGUCCgcgGGCggCGAGGCggGCAGa -3'
miRNA:   3'- aGUGGCAG--CAGG---CCGa-GCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 174348 0.68 0.920404
Target:  5'- gCGCCcUCGUCC-GC-CGGGAUGCGGa -3'
miRNA:   3'- aGUGGcAGCAGGcCGaGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 172828 0.66 0.97498
Target:  5'- cUACCGuUCGcCCGGCgccccccggUCGucgGACGCGGc -3'
miRNA:   3'- aGUGGC-AGCaGGCCG---------AGCu--UUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.