miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 27908 0.66 0.969649
Target:  5'- aCACCGcguaUCGguaCCGGCUgGGGA-GCGGg -3'
miRNA:   3'- aGUGGC----AGCa--GGCCGAgCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 30422 0.69 0.903151
Target:  5'- aCGCgggCGUCGUCgCGGCcCuGAACGCGGg -3'
miRNA:   3'- aGUG---GCAGCAG-GCCGaGcUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 36762 0.67 0.956648
Target:  5'- -gACCGUgaCGUCgGGC-CG-GACGCAGc -3'
miRNA:   3'- agUGGCA--GCAGgCCGaGCuUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 37972 0.72 0.780877
Target:  5'- aCGCUGacaUCGUCaC-GCUCGAGGCGCGGa -3'
miRNA:   3'- aGUGGC---AGCAG-GcCGAGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 39281 0.68 0.940291
Target:  5'- -gAUCGUCGagCCGGCU-GAucCGCAGg -3'
miRNA:   3'- agUGGCAGCa-GGCCGAgCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 43011 0.68 0.920404
Target:  5'- gCugCGguccgaggCGUUgGGCaggUCGAGGCGCAGg -3'
miRNA:   3'- aGugGCa-------GCAGgCCG---AGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 43068 0.68 0.930794
Target:  5'- cUCGCCGagGcaCCGGUccCGggGCGCGGc -3'
miRNA:   3'- -AGUGGCagCa-GGCCGa-GCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 45256 0.73 0.706009
Target:  5'- cUCGCCGUCGgccgCCGGC--GggGCGCu- -3'
miRNA:   3'- -AGUGGCAGCa---GGCCGagCuuUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 47221 0.67 0.948904
Target:  5'- -aACCGcaucaaggaGUUCGGCgaggcCGAGACGCAGg -3'
miRNA:   3'- agUGGCag-------CAGGCCGa----GCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 49719 0.74 0.666906
Target:  5'- gCACgCGUCGUaCCuGCUCGGGACGgAGg -3'
miRNA:   3'- aGUG-GCAGCA-GGcCGAGCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 55217 0.66 0.974731
Target:  5'- -uGCCGUCGagcucugcacaguUCuCGGUUCcgacaccguGAAACGCAGa -3'
miRNA:   3'- agUGGCAGC-------------AG-GCCGAG---------CUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 58952 0.72 0.784446
Target:  5'- gUCAgC-UCGUagacgcgcggcagcaUCGGCUCGAAGCGCAGc -3'
miRNA:   3'- -AGUgGcAGCA---------------GGCCGAGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 65253 0.67 0.956648
Target:  5'- aUCGCCGccugcCGUCCGGacucCUCGAGAuccUGCAa -3'
miRNA:   3'- -AGUGGCa----GCAGGCC----GAGCUUU---GCGUc -5'
9120 5' -55.4 NC_002512.2 + 67640 0.68 0.930794
Target:  5'- aCACgGUCGUCCacgGGCcccCG-GACGCGGg -3'
miRNA:   3'- aGUGgCAGCAGG---CCGa--GCuUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 70229 0.68 0.940291
Target:  5'- aCACCGgcUCGgugCCGGCgcucgucugCGAGAauCGCGGg -3'
miRNA:   3'- aGUGGC--AGCa--GGCCGa--------GCUUU--GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 70786 0.69 0.883936
Target:  5'- aUC-CCGUCGUCCucgucGC-CGuuGCGCAGg -3'
miRNA:   3'- -AGuGGCAGCAGGc----CGaGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 72874 0.7 0.877109
Target:  5'- gUCGCCGUUGUCgcggGGCUCGGGcccgaaGCGGc -3'
miRNA:   3'- -AGUGGCAGCAGg---CCGAGCUUug----CGUC- -5'
9120 5' -55.4 NC_002512.2 + 75147 0.68 0.914875
Target:  5'- aCGCCGUCGgacgCGGC-CGcGGACGCAa -3'
miRNA:   3'- aGUGGCAGCag--GCCGaGC-UUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 75577 0.66 0.972407
Target:  5'- cCGCCGcCGUCgCGG-UCGAcGugGCGGc -3'
miRNA:   3'- aGUGGCaGCAG-GCCgAGCU-UugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 76402 0.67 0.956281
Target:  5'- aCGCCGUCc-CCGGaCUgGAcgacgguAACGCAGa -3'
miRNA:   3'- aGUGGCAGcaGGCC-GAgCU-------UUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.