miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 1670 0.68 0.925711
Target:  5'- cCGCCGucUCGcCCGGCcUCGAc-CGCGGc -3'
miRNA:   3'- aGUGGC--AGCaGGCCG-AGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 1858 0.68 0.925711
Target:  5'- cUCGCCGcCGUCCGGUcgccccUCGuccCGCGu -3'
miRNA:   3'- -AGUGGCaGCAGGCCG------AGCuuuGCGUc -5'
9120 5' -55.4 NC_002512.2 + 2270 0.7 0.877109
Target:  5'- cUCGCCGcCGccgcccgcccUCCGGCcgcugCGGGugGCGGg -3'
miRNA:   3'- -AGUGGCaGC----------AGGCCGa----GCUUugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 2320 0.66 0.97498
Target:  5'- gCGCCGgcgGUCCGGaggcCUCGGu-CGCGGa -3'
miRNA:   3'- aGUGGCag-CAGGCC----GAGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 3128 0.73 0.706009
Target:  5'- cUCGCCcuccgcGUCGUCCGGC-CGGAGCcCGGu -3'
miRNA:   3'- -AGUGG------CAGCAGGCCGaGCUUUGcGUC- -5'
9120 5' -55.4 NC_002512.2 + 3162 0.66 0.966393
Target:  5'- cCGCCGUCGUcgcccgcggccucCCGucGCUCGAcgccgcCGCGGg -3'
miRNA:   3'- aGUGGCAGCA-------------GGC--CGAGCUuu----GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 4868 0.68 0.920404
Target:  5'- uUCGCCGcgugCGgcgCCGGCUgGAGGaGCGGc -3'
miRNA:   3'- -AGUGGCa---GCa--GGCCGAgCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 5086 0.7 0.862847
Target:  5'- gUCGUCGUCG-CCGGCgUCG--GCGCGGg -3'
miRNA:   3'- -AGUGGCAGCaGGCCG-AGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 6665 0.67 0.952883
Target:  5'- gCACCGag--CCGGC-CGGGACGCGc -3'
miRNA:   3'- aGUGGCagcaGGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 7035 0.73 0.734751
Target:  5'- -gGCuCGUCGUUCGGgaCGAAGCgGCAGu -3'
miRNA:   3'- agUG-GCAGCAGGCCgaGCUUUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 8287 0.66 0.976909
Target:  5'- cUCGCCGUCcaccgaccccccUCCGGgUCGAcggaGCAGg -3'
miRNA:   3'- -AGUGGCAGc-----------AGGCCgAGCUuug-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 9687 0.71 0.815586
Target:  5'- cCGCCGUCGggccCCGGCggggguucgCGGaaccuccucccGACGCAGa -3'
miRNA:   3'- aGUGGCAGCa---GGCCGa--------GCU-----------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 10437 0.66 0.977373
Target:  5'- gUCGCCGUCG---GGCacgGggGCGCGGa -3'
miRNA:   3'- -AGUGGCAGCaggCCGag-CuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 11980 0.71 0.798513
Target:  5'- cCACCGucUCGUaCCGccGCUCGAcGACGCGGc -3'
miRNA:   3'- aGUGGC--AGCA-GGC--CGAGCU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 12312 0.7 0.876415
Target:  5'- gCGCCGcCGgaCCGGCUCGccgucgcGAACGCGa -3'
miRNA:   3'- aGUGGCaGCa-GGCCGAGC-------UUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 17964 0.68 0.914875
Target:  5'- cUC-CCGUCGgggucCCGacGCUCGAcGACGCGGc -3'
miRNA:   3'- -AGuGGCAGCa----GGC--CGAGCU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 21508 0.66 0.97498
Target:  5'- cUCGCag-CGUCgGGCcaccucgucgUCGAAACGCAc -3'
miRNA:   3'- -AGUGgcaGCAGgCCG----------AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 24917 0.72 0.762743
Target:  5'- gUCGCCcgcggCGUCgGGCUCGGccCGCAGc -3'
miRNA:   3'- -AGUGGca---GCAGgCCGAGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 25052 0.68 0.93129
Target:  5'- cCGCCGUCGUCCucccggacGGagccgccgcgccccCGGGACGCGGa -3'
miRNA:   3'- aGUGGCAGCAGG--------CCga------------GCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 26650 0.71 0.815586
Target:  5'- cCACCagcgcacgagGUCGggggCgGGCUCGAAGCgGCAGa -3'
miRNA:   3'- aGUGG----------CAGCa---GgCCGAGCUUUG-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.