miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 102633 0.66 0.966699
Target:  5'- aCGCCGUCGccguUCCGGC-CGu--CGCc- -3'
miRNA:   3'- aGUGGCAGC----AGGCCGaGCuuuGCGuc -5'
9120 5' -55.4 NC_002512.2 + 112381 0.66 0.972407
Target:  5'- cUCACCGcCGUCaGcGCgaaccCGGGAUGCAGc -3'
miRNA:   3'- -AGUGGCaGCAGgC-CGa----GCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 2320 0.66 0.97498
Target:  5'- gCGCCGgcgGUCCGGaggcCUCGGu-CGCGGa -3'
miRNA:   3'- aGUGGCag-CAGGCC----GAGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 3162 0.66 0.966393
Target:  5'- cCGCCGUCGUcgcccgcggccucCCGucGCUCGAcgccgcCGCGGg -3'
miRNA:   3'- aGUGGCAGCA-------------GGC--CGAGCUuu----GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 106759 0.66 0.966699
Target:  5'- gCuCCG-CGUCCGGCucUCGGccCGCGGc -3'
miRNA:   3'- aGuGGCaGCAGGCCG--AGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 75577 0.66 0.972407
Target:  5'- cCGCCGcCGUCgCGG-UCGAcGugGCGGc -3'
miRNA:   3'- aGUGGCaGCAG-GCCgAGCU-UugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 126103 0.66 0.963226
Target:  5'- aUCACCGaggucggccggugUCG-CCGGUUCGAGAucuccuCGUAGc -3'
miRNA:   3'- -AGUGGC-------------AGCaGGCCGAGCUUU------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 107794 0.66 0.972407
Target:  5'- gCGCCGaccucgCGUCCGGCgCGu-GCgGCAGc -3'
miRNA:   3'- aGUGGCa-----GCAGGCCGaGCuuUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 88604 0.66 0.972407
Target:  5'- cCGCCGUgCGcgcggCCGGCgUCGGGACGa-- -3'
miRNA:   3'- aGUGGCA-GCa----GGCCG-AGCUUUGCguc -5'
9120 5' -55.4 NC_002512.2 + 120046 0.66 0.963552
Target:  5'- aCGCCGguccccgaCGcCCGGCgguUCGAcgugAACGCGGg -3'
miRNA:   3'- aGUGGCa-------GCaGGCCG---AGCU----UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 114013 0.66 0.963552
Target:  5'- --gUCGUCGUCCGGCgggcccgccUCGGcgAACGCc- -3'
miRNA:   3'- aguGGCAGCAGGCCG---------AGCU--UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 123455 0.66 0.966699
Target:  5'- -gACCGcUgGUUCGGgUCGGAcaACGCGGu -3'
miRNA:   3'- agUGGC-AgCAGGCCgAGCUU--UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 134877 0.66 0.963552
Target:  5'- aCGCCGUCGgggaCCuggacuGCUCGGAcGCGCAc -3'
miRNA:   3'- aGUGGCAGCa---GGc-----CGAGCUU-UGCGUc -5'
9120 5' -55.4 NC_002512.2 + 95013 0.66 0.972407
Target:  5'- gUCG-CGUCGUCCGGggCaGggGgGCGGu -3'
miRNA:   3'- -AGUgGCAGCAGGCCgaG-CuuUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 100318 0.66 0.966699
Target:  5'- -gGCCGaCGUcCCGGCgccUCGGGACugGCGGg -3'
miRNA:   3'- agUGGCaGCA-GGCCG---AGCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 84506 0.66 0.963552
Target:  5'- aCGCCG-CGUCgGGCUCccaguCGUAGc -3'
miRNA:   3'- aGUGGCaGCAGgCCGAGcuuu-GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 114285 0.66 0.972407
Target:  5'- cCGCCG-CGUCCGuGUUCuuguacacccGGCGCAGg -3'
miRNA:   3'- aGUGGCaGCAGGC-CGAGcu--------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 27908 0.66 0.969649
Target:  5'- aCACCGcguaUCGguaCCGGCUgGGGA-GCGGg -3'
miRNA:   3'- aGUGGC----AGCa--GGCCGAgCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 78389 0.66 0.974731
Target:  5'- -aACCG-CGaggCCGGCUgGAgaucgagAGCGCGGg -3'
miRNA:   3'- agUGGCaGCa--GGCCGAgCU-------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 21508 0.66 0.97498
Target:  5'- cUCGCag-CGUCgGGCcaccucgucgUCGAAACGCAc -3'
miRNA:   3'- -AGUGgcaGCAGgCCG----------AGCUUUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.