miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 5086 0.7 0.862847
Target:  5'- gUCGUCGUCG-CCGGCgUCG--GCGCGGg -3'
miRNA:   3'- -AGUGGCAGCaGGCCG-AGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 58952 0.72 0.784446
Target:  5'- gUCAgC-UCGUagacgcgcggcagcaUCGGCUCGAAGCGCAGc -3'
miRNA:   3'- -AGUgGcAGCA---------------GGCCGAGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 11980 0.71 0.798513
Target:  5'- cCACCGucUCGUaCCGccGCUCGAcGACGCGGc -3'
miRNA:   3'- aGUGGC--AGCA-GGC--CGAGCU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 78953 0.71 0.807124
Target:  5'- cCGCCGgagccuaaGUCCGGCUCGGAcuuaGCGUc- -3'
miRNA:   3'- aGUGGCag------CAGGCCGAGCUU----UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 26650 0.71 0.815586
Target:  5'- cCACCagcgcacgagGUCGggggCgGGCUCGAAGCgGCAGa -3'
miRNA:   3'- aGUGG----------CAGCa---GgCCGAGCUUUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 9687 0.71 0.815586
Target:  5'- cCGCCGUCGggccCCGGCggggguucgCGGaaccuccucccGACGCAGa -3'
miRNA:   3'- aGUGGCAGCa---GGCCGa--------GCU-----------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 134787 0.71 0.832036
Target:  5'- cCGCCGUCG-CCGaGCUCGAGgucuacuucACGgAGc -3'
miRNA:   3'- aGUGGCAGCaGGC-CGAGCUU---------UGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 82197 0.7 0.84001
Target:  5'- cCGCCGUCGggCCGGCguccuccCGggGCGgGa -3'
miRNA:   3'- aGUGGCAGCa-GGCCGa------GCuuUGCgUc -5'
9120 5' -55.4 NC_002512.2 + 84340 0.7 0.847807
Target:  5'- gUCGCCGcguccUCGagcgggaugcUCCGGCcCGAcGCGCAGa -3'
miRNA:   3'- -AGUGGC-----AGC----------AGGCCGaGCUuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 152276 0.72 0.771869
Target:  5'- gUCGCuCGUCGuUCCGGCggCGAucCGCGa -3'
miRNA:   3'- -AGUG-GCAGC-AGGCCGa-GCUuuGCGUc -5'
9120 5' -55.4 NC_002512.2 + 24917 0.72 0.762743
Target:  5'- gUCGCCcgcggCGUCgGGCUCGGccCGCAGc -3'
miRNA:   3'- -AGUGGca---GCAGgCCGAGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 156537 0.72 0.75351
Target:  5'- cCugCGaCG-CCGGUUCGGAGCGCGu -3'
miRNA:   3'- aGugGCaGCaGGCCGAGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 105360 0.75 0.587902
Target:  5'- gCGCCGUCGUCUGGCcCGccuuGACGUAc -3'
miRNA:   3'- aGUGGCAGCAGGCCGaGCu---UUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 101612 0.74 0.637274
Target:  5'- -gGCCGUCGgcCCGGCgcCGGGACGCGa -3'
miRNA:   3'- agUGGCAGCa-GGCCGa-GCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 123777 0.74 0.647165
Target:  5'- cUC-CCGUgaCGUCUGGCUCGuGAACGCGa -3'
miRNA:   3'- -AGuGGCA--GCAGGCCGAGC-UUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 49719 0.74 0.666906
Target:  5'- gCACgCGUCGUaCCuGCUCGGGACGgAGg -3'
miRNA:   3'- aGUG-GCAGCA-GGcCGAGCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 82020 0.74 0.686542
Target:  5'- -aGCCGUCGcCCGGgUCGggGuCGCGc -3'
miRNA:   3'- agUGGCAGCaGGCCgAGCuuU-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 3128 0.73 0.706009
Target:  5'- cUCGCCcuccgcGUCGUCCGGC-CGGAGCcCGGu -3'
miRNA:   3'- -AGUGG------CAGCAGGCCGaGCUUUGcGUC- -5'
9120 5' -55.4 NC_002512.2 + 45256 0.73 0.706009
Target:  5'- cUCGCCGUCGgccgCCGGC--GggGCGCu- -3'
miRNA:   3'- -AGUGGCAGCa---GGCCGagCuuUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 7035 0.73 0.734751
Target:  5'- -gGCuCGUCGUUCGGgaCGAAGCgGCAGu -3'
miRNA:   3'- agUG-GCAGCAGGCCgaGCUUUG-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.