miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 107235 1.1 0.005055
Target:  5'- gUCACCGUCGUCCGGCUCGAAACGCAGg -3'
miRNA:   3'- -AGUGGCAGCAGGCCGAGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 225102 0.77 0.473731
Target:  5'- -aACCGUCGcaaCCGGCgcagcUCGAGGCGCAGc -3'
miRNA:   3'- agUGGCAGCa--GGCCG-----AGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 214566 0.77 0.492076
Target:  5'- cUCGCCGUCGUCCccucccgccugGGCgaCGAGACGCu- -3'
miRNA:   3'- -AGUGGCAGCAGG-----------CCGa-GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 104762 0.77 0.510741
Target:  5'- gUCGCCGUCGUCCcGgUCGGAcgGCGCGu -3'
miRNA:   3'- -AGUGGCAGCAGGcCgAGCUU--UGCGUc -5'
9120 5' -55.4 NC_002512.2 + 158314 0.76 0.558585
Target:  5'- cCGCgGUCGUCCGGCgCGAGuccGCGCu- -3'
miRNA:   3'- aGUGgCAGCAGGCCGaGCUU---UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 105360 0.75 0.587902
Target:  5'- gCGCCGUCGUCUGGCcCGccuuGACGUAc -3'
miRNA:   3'- aGUGGCAGCAGGCCGaGCu---UUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 192783 0.74 0.637274
Target:  5'- gUCACCGUCGUgCGGCgCGGgcacAACGCc- -3'
miRNA:   3'- -AGUGGCAGCAgGCCGaGCU----UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 101612 0.74 0.637274
Target:  5'- -gGCCGUCGgcCCGGCgcCGGGACGCGa -3'
miRNA:   3'- agUGGCAGCa-GGCCGa-GCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 91873 0.74 0.647165
Target:  5'- -gGCCGcCGUCCGGCgcgggCGGcGGCGCGGc -3'
miRNA:   3'- agUGGCaGCAGGCCGa----GCU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 123777 0.74 0.647165
Target:  5'- cUC-CCGUgaCGUCUGGCUCGuGAACGCGa -3'
miRNA:   3'- -AGuGGCA--GCAGGCCGAGC-UUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 49719 0.74 0.666906
Target:  5'- gCACgCGUCGUaCCuGCUCGGGACGgAGg -3'
miRNA:   3'- aGUG-GCAGCA-GGcCGAGCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 101225 0.74 0.686542
Target:  5'- cCGCCGgguucCGgcgCCGGCaguUCGAGAUGCAGa -3'
miRNA:   3'- aGUGGCa----GCa--GGCCG---AGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 82020 0.74 0.686542
Target:  5'- -aGCCGUCGcCCGGgUCGggGuCGCGc -3'
miRNA:   3'- agUGGCAGCaGGCCgAGCuuU-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 45256 0.73 0.706009
Target:  5'- cUCGCCGUCGgccgCCGGC--GggGCGCu- -3'
miRNA:   3'- -AGUGGCAGCa---GGCCGagCuuUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 3128 0.73 0.706009
Target:  5'- cUCGCCcuccgcGUCGUCCGGC-CGGAGCcCGGu -3'
miRNA:   3'- -AGUGG------CAGCAGGCCGaGCUUUGcGUC- -5'
9120 5' -55.4 NC_002512.2 + 201195 0.73 0.725243
Target:  5'- gCACCGcuUCGUCa-GCUCGucGCGCAGg -3'
miRNA:   3'- aGUGGC--AGCAGgcCGAGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 7035 0.73 0.734751
Target:  5'- -gGCuCGUCGUUCGGgaCGAAGCgGCAGu -3'
miRNA:   3'- agUG-GCAGCAGGCCgaGCUUUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 219915 0.73 0.734751
Target:  5'- cUCGucUCGUCGUCUGGUcuccgUCGAcGCGCGGg -3'
miRNA:   3'- -AGU--GGCAGCAGGCCG-----AGCUuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 126337 0.72 0.744176
Target:  5'- cCGCCG-CGUCCGGgaCGGGcGCGCAc -3'
miRNA:   3'- aGUGGCaGCAGGCCgaGCUU-UGCGUc -5'
9120 5' -55.4 NC_002512.2 + 156537 0.72 0.75351
Target:  5'- cCugCGaCG-CCGGUUCGGAGCGCGu -3'
miRNA:   3'- aGugGCaGCaGGCCGAGCUUUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.