miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 105907 0.66 0.972407
Target:  5'- cUCGCCGUCGUCguacaCGGAACGcCAGa -3'
miRNA:   3'- -AGUGGCAGCAGgccgaGCUUUGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 203144 0.66 0.977373
Target:  5'- aUCACCGUggCGUacagCGGCgccggCGAcGCGCAc -3'
miRNA:   3'- -AGUGGCA--GCAg---GCCGa----GCUuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 196732 0.66 0.977373
Target:  5'- cCGCuuCGUCGUCCuguacGGCUCGAccggcGGCGUg- -3'
miRNA:   3'- aGUG--GCAGCAGG-----CCGAGCU-----UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 55217 0.66 0.974731
Target:  5'- -uGCCGUCGagcucugcacaguUCuCGGUUCcgacaccguGAAACGCAGa -3'
miRNA:   3'- agUGGCAGC-------------AG-GCCGAG---------CUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 77687 0.66 0.974227
Target:  5'- gUCGacaCGUCGUCCGGacgcggucaagugaaCGAGACGCc- -3'
miRNA:   3'- -AGUg--GCAGCAGGCCga-------------GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 189632 0.66 0.977373
Target:  5'- -gAUCGUCGcggUCGGCuucgUCGGGACGCGc -3'
miRNA:   3'- agUGGCAGCa--GGCCG----AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 172828 0.66 0.97498
Target:  5'- cUACCGuUCGcCCGGCgccccccggUCGucgGACGCGGc -3'
miRNA:   3'- aGUGGC-AGCaGGCCG---------AGCu--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 226748 0.66 0.97498
Target:  5'- -gACCGggcUCCGGC-CGGacGACGCGGa -3'
miRNA:   3'- agUGGCagcAGGCCGaGCU--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 132550 0.66 0.972407
Target:  5'- gCGCCGUCGgccucUCCGccCUCGAccccggcgGGCGCGGc -3'
miRNA:   3'- aGUGGCAGC-----AGGCc-GAGCU--------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 99904 0.66 0.971599
Target:  5'- gCGCCGcCGgcgcucCCGGCgguguucgaucgcgUCGcAGACGCAGa -3'
miRNA:   3'- aGUGGCaGCa-----GGCCG--------------AGC-UUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 107235 1.1 0.005055
Target:  5'- gUCACCGUCGUCCGGCUCGAAACGCAGg -3'
miRNA:   3'- -AGUGGCAGCAGGCCGAGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 105627 0.66 0.977142
Target:  5'- -gGCCGUCGUcggucuccgagacCCGGC-CGAGGuagggcgagcCGCAGc -3'
miRNA:   3'- agUGGCAGCA-------------GGCCGaGCUUU----------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 156527 0.66 0.977373
Target:  5'- gCGCgGggGUCCGGCggCGGgaacguguacgcGACGCGGg -3'
miRNA:   3'- aGUGgCagCAGGCCGa-GCU------------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 126830 0.66 0.972407
Target:  5'- gUC-CCGUCGU-CGcGCUCGu--CGCGGu -3'
miRNA:   3'- -AGuGGCAGCAgGC-CGAGCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 190216 0.66 0.972407
Target:  5'- gCGCgGUCGUCCGGgaCGGccACGUc- -3'
miRNA:   3'- aGUGgCAGCAGGCCgaGCUu-UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 228213 0.66 0.97498
Target:  5'- cCGCgGUCGaggCCGGg-CGAGACgGCGGg -3'
miRNA:   3'- aGUGgCAGCa--GGCCgaGCUUUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 90482 0.66 0.97214
Target:  5'- aUCACCGgggCGUCCucgacgggaucggGGC-CGAGGCcgGCGGc -3'
miRNA:   3'- -AGUGGCa--GCAGG-------------CCGaGCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 94301 0.66 0.970775
Target:  5'- -aGCgGUCGUccacccgguugcgccCCGGCgCGAAACGCu- -3'
miRNA:   3'- agUGgCAGCA---------------GGCCGaGCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 156327 0.66 0.97498
Target:  5'- -aGCuCGUCGagCGGCUgCGGGACcuGCAGa -3'
miRNA:   3'- agUG-GCAGCagGCCGA-GCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 181447 0.66 0.972407
Target:  5'- aUCACCGUCGucuucgucaggaUCCGG-UCGAAguccGgGUAGg -3'
miRNA:   3'- -AGUGGCAGC------------AGGCCgAGCUU----UgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.