miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 91873 0.74 0.647165
Target:  5'- -gGCCGcCGUCCGGCgcgggCGGcGGCGCGGc -3'
miRNA:   3'- agUGGCaGCAGGCCGa----GCU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 91925 0.66 0.97498
Target:  5'- gCGCCGUCGg-CGGC-CGAcuuggucuugGGCGCGa -3'
miRNA:   3'- aGUGGCAGCagGCCGaGCU----------UUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 94301 0.66 0.970775
Target:  5'- -aGCgGUCGUccacccgguugcgccCCGGCgCGAAACGCu- -3'
miRNA:   3'- agUGgCAGCA---------------GGCCGaGCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 95013 0.66 0.972407
Target:  5'- gUCG-CGUCGUCCGGggCaGggGgGCGGu -3'
miRNA:   3'- -AGUgGCAGCAGGCCgaG-CuuUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 95095 0.69 0.903151
Target:  5'- -gACCGgCGUCgGGCcCGggGaCGCGGg -3'
miRNA:   3'- agUGGCaGCAGgCCGaGCuuU-GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 95733 0.69 0.89696
Target:  5'- cUCcCCGUCcccgCCGGC-CGGGACGCGc -3'
miRNA:   3'- -AGuGGCAGca--GGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 96164 0.67 0.955541
Target:  5'- gUCGCUGUCGgugucgaccgaccgUCCGGUggucCGGGAgGCGGc -3'
miRNA:   3'- -AGUGGCAGC--------------AGGCCGa---GCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 99528 0.71 0.807124
Target:  5'- -gGCCGcgcgUGUCCcGCUCGAugcAGCGCAGg -3'
miRNA:   3'- agUGGCa---GCAGGcCGAGCU---UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 99904 0.66 0.971599
Target:  5'- gCGCCGcCGgcgcucCCGGCgguguucgaucgcgUCGcAGACGCAGa -3'
miRNA:   3'- aGUGGCaGCa-----GGCCG--------------AGC-UUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 100130 0.66 0.977373
Target:  5'- gUCACCGUCGUggaCGGCggCGGAcCGg-- -3'
miRNA:   3'- -AGUGGCAGCAg--GCCGa-GCUUuGCguc -5'
9120 5' -55.4 NC_002512.2 + 100221 0.67 0.956648
Target:  5'- aCGCCGUCGaggCGGCgUCGAcGgGCGGc -3'
miRNA:   3'- aGUGGCAGCag-GCCG-AGCUuUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 100318 0.66 0.966699
Target:  5'- -gGCCGaCGUcCCGGCgccUCGGGACugGCGGg -3'
miRNA:   3'- agUGGCaGCA-GGCCG---AGCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 101225 0.74 0.686542
Target:  5'- cCGCCGgguucCGgcgCCGGCaguUCGAGAUGCAGa -3'
miRNA:   3'- aGUGGCa----GCa--GGCCG---AGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 101612 0.74 0.637274
Target:  5'- -gGCCGUCGgcCCGGCgcCGGGACGCGa -3'
miRNA:   3'- agUGGCAGCa-GGCCGa-GCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 102267 0.7 0.84001
Target:  5'- -gGgCGUCGUCCaucucGGCUCGgcGCGCGu -3'
miRNA:   3'- agUgGCAGCAGG-----CCGAGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 102633 0.66 0.966699
Target:  5'- aCGCCGUCGccguUCCGGC-CGu--CGCc- -3'
miRNA:   3'- aGUGGCAGC----AGGCCGaGCuuuGCGuc -5'
9120 5' -55.4 NC_002512.2 + 103437 0.68 0.925711
Target:  5'- -aACgCGUCGUcCCGGUcCGA-GCGCGGg -3'
miRNA:   3'- agUG-GCAGCA-GGCCGaGCUuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 103451 0.69 0.903151
Target:  5'- cCGCCGUCG-CCGGC-CGG---GCGGg -3'
miRNA:   3'- aGUGGCAGCaGGCCGaGCUuugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 104276 0.68 0.939382
Target:  5'- cCGCCGgcgucuuucucgCGUCCGGCggCGGGAgGCu- -3'
miRNA:   3'- aGUGGCa-----------GCAGGCCGa-GCUUUgCGuc -5'
9120 5' -55.4 NC_002512.2 + 104762 0.77 0.510741
Target:  5'- gUCGCCGUCGUCCcGgUCGGAcgGCGCGu -3'
miRNA:   3'- -AGUGGCAGCAGGcCgAGCUU--UGCGUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.