Results 61 - 80 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 91873 | 0.74 | 0.647165 |
Target: 5'- -gGCCGcCGUCCGGCgcgggCGGcGGCGCGGc -3' miRNA: 3'- agUGGCaGCAGGCCGa----GCU-UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 91925 | 0.66 | 0.97498 |
Target: 5'- gCGCCGUCGg-CGGC-CGAcuuggucuugGGCGCGa -3' miRNA: 3'- aGUGGCAGCagGCCGaGCU----------UUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 94301 | 0.66 | 0.970775 |
Target: 5'- -aGCgGUCGUccacccgguugcgccCCGGCgCGAAACGCu- -3' miRNA: 3'- agUGgCAGCA---------------GGCCGaGCUUUGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 95013 | 0.66 | 0.972407 |
Target: 5'- gUCG-CGUCGUCCGGggCaGggGgGCGGu -3' miRNA: 3'- -AGUgGCAGCAGGCCgaG-CuuUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 95095 | 0.69 | 0.903151 |
Target: 5'- -gACCGgCGUCgGGCcCGggGaCGCGGg -3' miRNA: 3'- agUGGCaGCAGgCCGaGCuuU-GCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 95733 | 0.69 | 0.89696 |
Target: 5'- cUCcCCGUCcccgCCGGC-CGGGACGCGc -3' miRNA: 3'- -AGuGGCAGca--GGCCGaGCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 96164 | 0.67 | 0.955541 |
Target: 5'- gUCGCUGUCGgugucgaccgaccgUCCGGUggucCGGGAgGCGGc -3' miRNA: 3'- -AGUGGCAGC--------------AGGCCGa---GCUUUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 99528 | 0.71 | 0.807124 |
Target: 5'- -gGCCGcgcgUGUCCcGCUCGAugcAGCGCAGg -3' miRNA: 3'- agUGGCa---GCAGGcCGAGCU---UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 99904 | 0.66 | 0.971599 |
Target: 5'- gCGCCGcCGgcgcucCCGGCgguguucgaucgcgUCGcAGACGCAGa -3' miRNA: 3'- aGUGGCaGCa-----GGCCG--------------AGC-UUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 100130 | 0.66 | 0.977373 |
Target: 5'- gUCACCGUCGUggaCGGCggCGGAcCGg-- -3' miRNA: 3'- -AGUGGCAGCAg--GCCGa-GCUUuGCguc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 100221 | 0.67 | 0.956648 |
Target: 5'- aCGCCGUCGaggCGGCgUCGAcGgGCGGc -3' miRNA: 3'- aGUGGCAGCag-GCCG-AGCUuUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 100318 | 0.66 | 0.966699 |
Target: 5'- -gGCCGaCGUcCCGGCgccUCGGGACugGCGGg -3' miRNA: 3'- agUGGCaGCA-GGCCG---AGCUUUG--CGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 101225 | 0.74 | 0.686542 |
Target: 5'- cCGCCGgguucCGgcgCCGGCaguUCGAGAUGCAGa -3' miRNA: 3'- aGUGGCa----GCa--GGCCG---AGCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 101612 | 0.74 | 0.637274 |
Target: 5'- -gGCCGUCGgcCCGGCgcCGGGACGCGa -3' miRNA: 3'- agUGGCAGCa-GGCCGa-GCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 102267 | 0.7 | 0.84001 |
Target: 5'- -gGgCGUCGUCCaucucGGCUCGgcGCGCGu -3' miRNA: 3'- agUgGCAGCAGG-----CCGAGCuuUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 102633 | 0.66 | 0.966699 |
Target: 5'- aCGCCGUCGccguUCCGGC-CGu--CGCc- -3' miRNA: 3'- aGUGGCAGC----AGGCCGaGCuuuGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 103437 | 0.68 | 0.925711 |
Target: 5'- -aACgCGUCGUcCCGGUcCGA-GCGCGGg -3' miRNA: 3'- agUG-GCAGCA-GGCCGaGCUuUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 103451 | 0.69 | 0.903151 |
Target: 5'- cCGCCGUCG-CCGGC-CGG---GCGGg -3' miRNA: 3'- aGUGGCAGCaGGCCGaGCUuugCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 104276 | 0.68 | 0.939382 |
Target: 5'- cCGCCGgcgucuuucucgCGUCCGGCggCGGGAgGCu- -3' miRNA: 3'- aGUGGCa-----------GCAGGCCGa-GCUUUgCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 104762 | 0.77 | 0.510741 |
Target: 5'- gUCGCCGUCGUCCcGgUCGGAcgGCGCGu -3' miRNA: 3'- -AGUGGCAGCAGGcCgAGCUU--UGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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