Results 61 - 80 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 196264 | 0.7 | 0.862847 |
Target: 5'- gUCACCG--GUCgCGGCg-GAAGCGCGGa -3' miRNA: 3'- -AGUGGCagCAG-GCCGagCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 133858 | 0.68 | 0.920404 |
Target: 5'- aCACCGaggaCGUCCuggggcGGCUCGAGGaGCGGc -3' miRNA: 3'- aGUGGCa---GCAGG------CCGAGCUUUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 75147 | 0.68 | 0.914875 |
Target: 5'- aCGCCGUCGgacgCGGC-CGcGGACGCAa -3' miRNA: 3'- aGUGGCAGCag--GCCGaGC-UUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 17964 | 0.68 | 0.914875 |
Target: 5'- cUC-CCGUCGgggucCCGacGCUCGAcGACGCGGc -3' miRNA: 3'- -AGuGGCAGCa----GGC--CGAGCU-UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 135251 | 0.68 | 0.914875 |
Target: 5'- -gGCCGUCGUCCGcgccgcGCUCGAcGAgGCc- -3' miRNA: 3'- agUGGCAGCAGGC------CGAGCU-UUgCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 104935 | 0.68 | 0.914875 |
Target: 5'- -gGCCuccUCGUCCGGCgUCG--GCGCGGc -3' miRNA: 3'- agUGGc--AGCAGGCCG-AGCuuUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 83183 | 0.68 | 0.91431 |
Target: 5'- cCGCCGUCGucuccgucgcccgUCCGcGCgCGggGCGgGGg -3' miRNA: 3'- aGUGGCAGC-------------AGGC-CGaGCuuUGCgUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 121361 | 0.69 | 0.909123 |
Target: 5'- cCGCCGUCGgguccCCGGC-CGGucgGGCGcCGGg -3' miRNA: 3'- aGUGGCAGCa----GGCCGaGCU---UUGC-GUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 103451 | 0.69 | 0.903151 |
Target: 5'- cCGCCGUCG-CCGGC-CGG---GCGGg -3' miRNA: 3'- aGUGGCAGCaGGCCGaGCUuugCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 79217 | 0.69 | 0.903151 |
Target: 5'- cCGCCG-CGcCCgcggaccucgaGGCUCGAGcuGCGCAGc -3' miRNA: 3'- aGUGGCaGCaGG-----------CCGAGCUU--UGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 30422 | 0.69 | 0.903151 |
Target: 5'- aCGCgggCGUCGUCgCGGCcCuGAACGCGGg -3' miRNA: 3'- aGUG---GCAGCAG-GCCGaGcUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 95095 | 0.69 | 0.903151 |
Target: 5'- -gACCGgCGUCgGGCcCGggGaCGCGGg -3' miRNA: 3'- agUGGCaGCAGgCCGaGCuuU-GCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 123524 | 0.69 | 0.89696 |
Target: 5'- uUCcUCGUCGUCUGGUacuccgagUCGGcgGGCGCGGa -3' miRNA: 3'- -AGuGGCAGCAGGCCG--------AGCU--UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 154621 | 0.69 | 0.883936 |
Target: 5'- cCGCCGUCG-CCgccaucgugGGgaCGGGACGCGGc -3' miRNA: 3'- aGUGGCAGCaGG---------CCgaGCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 70786 | 0.69 | 0.883936 |
Target: 5'- aUC-CCGUCGUCCucgucGC-CGuuGCGCAGg -3' miRNA: 3'- -AGuGGCAGCAGGc----CGaGCuuUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 2270 | 0.7 | 0.877109 |
Target: 5'- cUCGCCGcCGccgcccgcccUCCGGCcgcugCGGGugGCGGg -3' miRNA: 3'- -AGUGGCaGC----------AGGCCGa----GCUUugCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 72874 | 0.7 | 0.877109 |
Target: 5'- gUCGCCGUUGUCgcggGGCUCGGGcccgaaGCGGc -3' miRNA: 3'- -AGUGGCAGCAGg---CCGAGCUUug----CGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 12312 | 0.7 | 0.876415 |
Target: 5'- gCGCCGcCGgaCCGGCUCGccgucgcGAACGCGa -3' miRNA: 3'- aGUGGCaGCa-GGCCGAGC-------UUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 91481 | 0.7 | 0.870078 |
Target: 5'- gUACUugGUgGcCCgcGGCUCGAAGCGCAGg -3' miRNA: 3'- aGUGG--CAgCaGG--CCGAGCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 5086 | 0.7 | 0.862847 |
Target: 5'- gUCGUCGUCG-CCGGCgUCG--GCGCGGg -3' miRNA: 3'- -AGUGGCAGCaGGCCG-AGCuuUGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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