miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 78389 0.66 0.974731
Target:  5'- -aACCG-CGaggCCGGCUgGAgaucgagAGCGCGGg -3'
miRNA:   3'- agUGGCaGCa--GGCCGAgCU-------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 77687 0.66 0.974227
Target:  5'- gUCGacaCGUCGUCCGGacgcggucaagugaaCGAGACGCc- -3'
miRNA:   3'- -AGUg--GCAGCAGGCCga-------------GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 126830 0.66 0.972407
Target:  5'- gUC-CCGUCGU-CGcGCUCGu--CGCGGu -3'
miRNA:   3'- -AGuGGCAGCAgGC-CGAGCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 190216 0.66 0.972407
Target:  5'- gCGCgGUCGUCCGGgaCGGccACGUc- -3'
miRNA:   3'- aGUGgCAGCAGGCCgaGCUu-UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 132550 0.66 0.972407
Target:  5'- gCGCCGUCGgccucUCCGccCUCGAccccggcgGGCGCGGc -3'
miRNA:   3'- aGUGGCAGC-----AGGCc-GAGCU--------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 105907 0.66 0.972407
Target:  5'- cUCGCCGUCGUCguacaCGGAACGcCAGa -3'
miRNA:   3'- -AGUGGCAGCAGgccgaGCUUUGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 181447 0.66 0.972407
Target:  5'- aUCACCGUCGucuucgucaggaUCCGG-UCGAAguccGgGUAGg -3'
miRNA:   3'- -AGUGGCAGC------------AGGCCgAGCUU----UgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 114285 0.66 0.972407
Target:  5'- cCGCCG-CGUCCGuGUUCuuguacacccGGCGCAGg -3'
miRNA:   3'- aGUGGCaGCAGGC-CGAGcu--------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 75577 0.66 0.972407
Target:  5'- cCGCCGcCGUCgCGG-UCGAcGugGCGGc -3'
miRNA:   3'- aGUGGCaGCAG-GCCgAGCU-UugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 95013 0.66 0.972407
Target:  5'- gUCG-CGUCGUCCGGggCaGggGgGCGGu -3'
miRNA:   3'- -AGUgGCAGCAGGCCgaG-CuuUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 107794 0.66 0.972407
Target:  5'- gCGCCGaccucgCGUCCGGCgCGu-GCgGCAGc -3'
miRNA:   3'- aGUGGCa-----GCAGGCCGaGCuuUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 88604 0.66 0.972407
Target:  5'- cCGCCGUgCGcgcggCCGGCgUCGGGACGa-- -3'
miRNA:   3'- aGUGGCA-GCa----GGCCG-AGCUUUGCguc -5'
9120 5' -55.4 NC_002512.2 + 112381 0.66 0.972407
Target:  5'- cUCACCGcCGUCaGcGCgaaccCGGGAUGCAGc -3'
miRNA:   3'- -AGUGGCaGCAGgC-CGa----GCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 185996 0.66 0.97214
Target:  5'- gUCGCCGuggugggUCGUCCGGCaccuGGACGCc- -3'
miRNA:   3'- -AGUGGC-------AGCAGGCCGagc-UUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 90482 0.66 0.97214
Target:  5'- aUCACCGgggCGUCCucgacgggaucggGGC-CGAGGCcgGCGGc -3'
miRNA:   3'- -AGUGGCa--GCAGG-------------CCGaGCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 99904 0.66 0.971599
Target:  5'- gCGCCGcCGgcgcucCCGGCgguguucgaucgcgUCGcAGACGCAGa -3'
miRNA:   3'- aGUGGCaGCa-----GGCCG--------------AGC-UUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 94301 0.66 0.970775
Target:  5'- -aGCgGUCGUccacccgguugcgccCCGGCgCGAAACGCu- -3'
miRNA:   3'- agUGgCAGCA---------------GGCCGaGCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 172014 0.66 0.969649
Target:  5'- cCGCCGUCGccuggUCCGGC-CGGcagcauGCGCc- -3'
miRNA:   3'- aGUGGCAGC-----AGGCCGaGCUu-----UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 107971 0.66 0.969649
Target:  5'- cCGCCGccUCGUCCcGCUCGcuccccGCGCGu -3'
miRNA:   3'- aGUGGC--AGCAGGcCGAGCuu----UGCGUc -5'
9120 5' -55.4 NC_002512.2 + 27908 0.66 0.969649
Target:  5'- aCACCGcguaUCGguaCCGGCUgGGGA-GCGGg -3'
miRNA:   3'- aGUGGC----AGCa--GGCCGAgCUUUgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.