Results 21 - 40 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 55217 | 0.66 | 0.974731 |
Target: 5'- -uGCCGUCGagcucugcacaguUCuCGGUUCcgacaccguGAAACGCAGa -3' miRNA: 3'- agUGGCAGC-------------AG-GCCGAG---------CUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 77687 | 0.66 | 0.974227 |
Target: 5'- gUCGacaCGUCGUCCGGacgcggucaagugaaCGAGACGCc- -3' miRNA: 3'- -AGUg--GCAGCAGGCCga-------------GCUUUGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 181447 | 0.66 | 0.972407 |
Target: 5'- aUCACCGUCGucuucgucaggaUCCGG-UCGAAguccGgGUAGg -3' miRNA: 3'- -AGUGGCAGC------------AGGCCgAGCUU----UgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 126830 | 0.66 | 0.972407 |
Target: 5'- gUC-CCGUCGU-CGcGCUCGu--CGCGGu -3' miRNA: 3'- -AGuGGCAGCAgGC-CGAGCuuuGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 114285 | 0.66 | 0.972407 |
Target: 5'- cCGCCG-CGUCCGuGUUCuuguacacccGGCGCAGg -3' miRNA: 3'- aGUGGCaGCAGGC-CGAGcu--------UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 75577 | 0.66 | 0.972407 |
Target: 5'- cCGCCGcCGUCgCGG-UCGAcGugGCGGc -3' miRNA: 3'- aGUGGCaGCAG-GCCgAGCU-UugCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 95013 | 0.66 | 0.972407 |
Target: 5'- gUCG-CGUCGUCCGGggCaGggGgGCGGu -3' miRNA: 3'- -AGUgGCAGCAGGCCgaG-CuuUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 107794 | 0.66 | 0.972407 |
Target: 5'- gCGCCGaccucgCGUCCGGCgCGu-GCgGCAGc -3' miRNA: 3'- aGUGGCa-----GCAGGCCGaGCuuUG-CGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 88604 | 0.66 | 0.972407 |
Target: 5'- cCGCCGUgCGcgcggCCGGCgUCGGGACGa-- -3' miRNA: 3'- aGUGGCA-GCa----GGCCG-AGCUUUGCguc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 112381 | 0.66 | 0.972407 |
Target: 5'- cUCACCGcCGUCaGcGCgaaccCGGGAUGCAGc -3' miRNA: 3'- -AGUGGCaGCAGgC-CGa----GCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 190216 | 0.66 | 0.972407 |
Target: 5'- gCGCgGUCGUCCGGgaCGGccACGUc- -3' miRNA: 3'- aGUGgCAGCAGGCCgaGCUu-UGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 132550 | 0.66 | 0.972407 |
Target: 5'- gCGCCGUCGgccucUCCGccCUCGAccccggcgGGCGCGGc -3' miRNA: 3'- aGUGGCAGC-----AGGCc-GAGCU--------UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 105907 | 0.66 | 0.972407 |
Target: 5'- cUCGCCGUCGUCguacaCGGAACGcCAGa -3' miRNA: 3'- -AGUGGCAGCAGgccgaGCUUUGC-GUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 185996 | 0.66 | 0.97214 |
Target: 5'- gUCGCCGuggugggUCGUCCGGCaccuGGACGCc- -3' miRNA: 3'- -AGUGGC-------AGCAGGCCGagc-UUUGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 90482 | 0.66 | 0.97214 |
Target: 5'- aUCACCGgggCGUCCucgacgggaucggGGC-CGAGGCcgGCGGc -3' miRNA: 3'- -AGUGGCa--GCAGG-------------CCGaGCUUUG--CGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 99904 | 0.66 | 0.971599 |
Target: 5'- gCGCCGcCGgcgcucCCGGCgguguucgaucgcgUCGcAGACGCAGa -3' miRNA: 3'- aGUGGCaGCa-----GGCCG--------------AGC-UUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 94301 | 0.66 | 0.970775 |
Target: 5'- -aGCgGUCGUccacccgguugcgccCCGGCgCGAAACGCu- -3' miRNA: 3'- agUGgCAGCA---------------GGCCGaGCUUUGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 107971 | 0.66 | 0.969649 |
Target: 5'- cCGCCGccUCGUCCcGCUCGcuccccGCGCGu -3' miRNA: 3'- aGUGGC--AGCAGGcCGAGCuu----UGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 27908 | 0.66 | 0.969649 |
Target: 5'- aCACCGcguaUCGguaCCGGCUgGGGA-GCGGg -3' miRNA: 3'- aGUGGC----AGCa--GGCCGAgCUUUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 172014 | 0.66 | 0.969649 |
Target: 5'- cCGCCGUCGccuggUCCGGC-CGGcagcauGCGCc- -3' miRNA: 3'- aGUGGCAGC-----AGGCCGaGCUu-----UGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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