miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 181628 0.66 0.98744
Target:  5'- gGggGAACC-GAuGUCgUCCCACuuguuGGCc -3'
miRNA:   3'- gCuuCUUGGaCUuCGGgAGGGUG-----UCG- -5'
9121 3' -53.9 NC_002512.2 + 112161 0.67 0.97557
Target:  5'- aCGgcGAGCC-GgcGCUCgagCCCGCAcGCg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGa--GGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 190917 0.67 0.976793
Target:  5'- aGAGGGACCUGAcgaggcagcggaaccAGaCCCgggcgcacgcgggcgCCCGCcGCg -3'
miRNA:   3'- gCUUCUUGGACU---------------UC-GGGa--------------GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 220312 0.66 0.982242
Target:  5'- cCGggGGGCCgGggGCCgggCUCCgGgGGg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGG---GAGGgUgUCg -5'
9121 3' -53.9 NC_002512.2 + 128207 0.66 0.985858
Target:  5'- uGAGGAaaccGCCgacguaGAucGGCCCggcgUCCGCGGCc -3'
miRNA:   3'- gCUUCU----UGGa-----CU--UCGGGa---GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 136068 0.67 0.972984
Target:  5'- -cGAGAACCUGGguggcGGCgUUCCUGCuGCu -3'
miRNA:   3'- gcUUCUUGGACU-----UCGgGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 229882 0.67 0.97557
Target:  5'- aGGAGGACC---GGCCCUCaCgACGGg -3'
miRNA:   3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 129863 0.66 0.98744
Target:  5'- gGAGGAGCCccuUGAGGCCg-CacgcgaCGCGGCc -3'
miRNA:   3'- gCUUCUUGG---ACUUCGGgaGg-----GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 117877 0.66 0.980191
Target:  5'- cCGcAAGAcggacGCCgGggGCCCgucgcugCuCCACGGCc -3'
miRNA:   3'- -GC-UUCU-----UGGaCuuCGGGa------G-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 168122 0.66 0.982242
Target:  5'- aGGAGA----GggGCCCggCCGCGGCg -3'
miRNA:   3'- gCUUCUuggaCuuCGGGagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 222355 0.66 0.98744
Target:  5'- gGAGGAGCggcacgGGGccGCCUUCCC-CGGCg -3'
miRNA:   3'- gCUUCUUGga----CUU--CGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 98317 0.66 0.98744
Target:  5'- uCGguGAGCacgCUGAAGUCgCUCCCG-AGCg -3'
miRNA:   3'- -GCuuCUUG---GACUUCGG-GAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 156114 0.67 0.970206
Target:  5'- uGAAGGccaAgCUGgcGCCCUUcaagcgcuaCCACGGCu -3'
miRNA:   3'- gCUUCU---UgGACuuCGGGAG---------GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 74763 0.67 0.972984
Target:  5'- cCGGAcGACCcaGGAGCUCUUCCAgGGUg -3'
miRNA:   3'- -GCUUcUUGGa-CUUCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 119566 0.66 0.97797
Target:  5'- gGgcGGACCgcgGGAGCCCggcgggUCCCcucgcgcCAGCa -3'
miRNA:   3'- gCuuCUUGGa--CUUCGGG------AGGGu------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 184994 0.66 0.984128
Target:  5'- aCGuGGAGCgCUGcGGCCCggugCCgcugUACAGCg -3'
miRNA:   3'- -GCuUCUUG-GACuUCGGGa---GG----GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 123753 0.66 0.985858
Target:  5'- uGAAccuGAGCCUGAcgaacGGCCCggugUUCCGCccgGGCg -3'
miRNA:   3'- gCUU---CUUGGACU-----UCGGG----AGGGUG---UCG- -5'
9121 3' -53.9 NC_002512.2 + 110543 0.66 0.98744
Target:  5'- gCGGAGAagGCCcGGAGCaCCU-CgGCGGCc -3'
miRNA:   3'- -GCUUCU--UGGaCUUCG-GGAgGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 213856 0.66 0.982242
Target:  5'- aGAAGAuCCcGcuGCCCUucCCCACccGGCg -3'
miRNA:   3'- gCUUCUuGGaCuuCGGGA--GGGUG--UCG- -5'
9121 3' -53.9 NC_002512.2 + 158775 0.66 0.980191
Target:  5'- aGAAGAuCCUGgcGCUgguggCCCGgGGCg -3'
miRNA:   3'- gCUUCUuGGACuuCGGga---GGGUgUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.