Results 21 - 40 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9121 | 3' | -53.9 | NC_002512.2 | + | 181628 | 0.66 | 0.98744 |
Target: 5'- gGggGAACC-GAuGUCgUCCCACuuguuGGCc -3' miRNA: 3'- gCuuCUUGGaCUuCGGgAGGGUG-----UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 112161 | 0.67 | 0.97557 |
Target: 5'- aCGgcGAGCC-GgcGCUCgagCCCGCAcGCg -3' miRNA: 3'- -GCuuCUUGGaCuuCGGGa--GGGUGU-CG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 190917 | 0.67 | 0.976793 |
Target: 5'- aGAGGGACCUGAcgaggcagcggaaccAGaCCCgggcgcacgcgggcgCCCGCcGCg -3' miRNA: 3'- gCUUCUUGGACU---------------UC-GGGa--------------GGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 220312 | 0.66 | 0.982242 |
Target: 5'- cCGggGGGCCgGggGCCgggCUCCgGgGGg -3' miRNA: 3'- -GCuuCUUGGaCuuCGG---GAGGgUgUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 128207 | 0.66 | 0.985858 |
Target: 5'- uGAGGAaaccGCCgacguaGAucGGCCCggcgUCCGCGGCc -3' miRNA: 3'- gCUUCU----UGGa-----CU--UCGGGa---GGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 136068 | 0.67 | 0.972984 |
Target: 5'- -cGAGAACCUGGguggcGGCgUUCCUGCuGCu -3' miRNA: 3'- gcUUCUUGGACU-----UCGgGAGGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 229882 | 0.67 | 0.97557 |
Target: 5'- aGGAGGACC---GGCCCUCaCgACGGg -3' miRNA: 3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 129863 | 0.66 | 0.98744 |
Target: 5'- gGAGGAGCCccuUGAGGCCg-CacgcgaCGCGGCc -3' miRNA: 3'- gCUUCUUGG---ACUUCGGgaGg-----GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 117877 | 0.66 | 0.980191 |
Target: 5'- cCGcAAGAcggacGCCgGggGCCCgucgcugCuCCACGGCc -3' miRNA: 3'- -GC-UUCU-----UGGaCuuCGGGa------G-GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 168122 | 0.66 | 0.982242 |
Target: 5'- aGGAGA----GggGCCCggCCGCGGCg -3' miRNA: 3'- gCUUCUuggaCuuCGGGagGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 222355 | 0.66 | 0.98744 |
Target: 5'- gGAGGAGCggcacgGGGccGCCUUCCC-CGGCg -3' miRNA: 3'- gCUUCUUGga----CUU--CGGGAGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 98317 | 0.66 | 0.98744 |
Target: 5'- uCGguGAGCacgCUGAAGUCgCUCCCG-AGCg -3' miRNA: 3'- -GCuuCUUG---GACUUCGG-GAGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 156114 | 0.67 | 0.970206 |
Target: 5'- uGAAGGccaAgCUGgcGCCCUUcaagcgcuaCCACGGCu -3' miRNA: 3'- gCUUCU---UgGACuuCGGGAG---------GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 74763 | 0.67 | 0.972984 |
Target: 5'- cCGGAcGACCcaGGAGCUCUUCCAgGGUg -3' miRNA: 3'- -GCUUcUUGGa-CUUCGGGAGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 119566 | 0.66 | 0.97797 |
Target: 5'- gGgcGGACCgcgGGAGCCCggcgggUCCCcucgcgcCAGCa -3' miRNA: 3'- gCuuCUUGGa--CUUCGGG------AGGGu------GUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 184994 | 0.66 | 0.984128 |
Target: 5'- aCGuGGAGCgCUGcGGCCCggugCCgcugUACAGCg -3' miRNA: 3'- -GCuUCUUG-GACuUCGGGa---GG----GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 123753 | 0.66 | 0.985858 |
Target: 5'- uGAAccuGAGCCUGAcgaacGGCCCggugUUCCGCccgGGCg -3' miRNA: 3'- gCUU---CUUGGACU-----UCGGG----AGGGUG---UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 110543 | 0.66 | 0.98744 |
Target: 5'- gCGGAGAagGCCcGGAGCaCCU-CgGCGGCc -3' miRNA: 3'- -GCUUCU--UGGaCUUCG-GGAgGgUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 213856 | 0.66 | 0.982242 |
Target: 5'- aGAAGAuCCcGcuGCCCUucCCCACccGGCg -3' miRNA: 3'- gCUUCUuGGaCuuCGGGA--GGGUG--UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 158775 | 0.66 | 0.980191 |
Target: 5'- aGAAGAuCCUGgcGCUgguggCCCGgGGCg -3' miRNA: 3'- gCUUCUuGGACuuCGGga---GGGUgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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