miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 17425 0.68 0.957051
Target:  5'- uCGAGGcg---GAuGCCCUCCuCGCGGCg -3'
miRNA:   3'- -GCUUCuuggaCUuCGGGAGG-GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18027 0.71 0.860959
Target:  5'- cCGAcGAugCUGAGGUCCUUCUccuCGGCc -3'
miRNA:   3'- -GCUuCUugGACUUCGGGAGGGu--GUCG- -5'
9121 3' -53.9 NC_002512.2 + 18120 0.73 0.748507
Target:  5'- ---cGGGCCUccacGUCCUCCCGCAGCg -3'
miRNA:   3'- gcuuCUUGGAcuu-CGGGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18492 0.66 0.980191
Target:  5'- uCGAAGAAgCgGuuGCgCCUCuucuuCCGCAGCa -3'
miRNA:   3'- -GCUUCUUgGaCuuCG-GGAG-----GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 19163 0.71 0.857928
Target:  5'- uCGAAGGGCUcgucgacgcugagGAAGCgggugaUCUCCCGCGGCg -3'
miRNA:   3'- -GCUUCUUGGa------------CUUCG------GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 21991 0.67 0.968444
Target:  5'- uCGAGGAgccaccgccgagagcGCCaGAAGCCgUCCC-CGGa -3'
miRNA:   3'- -GCUUCU---------------UGGaCUUCGGgAGGGuGUCg -5'
9121 3' -53.9 NC_002512.2 + 22223 0.7 0.908503
Target:  5'- gGGAGAGCCcgGGAcGCCa--CCACGGCc -3'
miRNA:   3'- gCUUCUUGGa-CUU-CGGgagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 24517 0.72 0.829262
Target:  5'- ---uGGGCCUGAccGCCUUCCCGguCAGCg -3'
miRNA:   3'- gcuuCUUGGACUu-CGGGAGGGU--GUCG- -5'
9121 3' -53.9 NC_002512.2 + 29562 0.71 0.875625
Target:  5'- gGAGGAcGCCggcggGAAGCCgCUCCCcgAgGGCg -3'
miRNA:   3'- gCUUCU-UGGa----CUUCGG-GAGGG--UgUCG- -5'
9121 3' -53.9 NC_002512.2 + 29713 0.66 0.982242
Target:  5'- gGAGGAGCCcaugaccgUGucGCCCUaCCgugGCGGCg -3'
miRNA:   3'- gCUUCUUGG--------ACuuCGGGAgGG---UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 33080 0.7 0.908503
Target:  5'- aGAAGGACUgGAGGCUgUCgCC-CAGCu -3'
miRNA:   3'- gCUUCUUGGaCUUCGGgAG-GGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 35251 0.67 0.972984
Target:  5'- aGAAGAggACggGcAGGUCC-CCCGCGGCg -3'
miRNA:   3'- gCUUCU--UGgaC-UUCGGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 35326 0.71 0.853322
Target:  5'- uGAGGGGCac--GGCCUUCCCGgGGCg -3'
miRNA:   3'- gCUUCUUGgacuUCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 36207 0.66 0.98744
Target:  5'- --cGGGACCgacugcgGGAGCCCU-CCugGGUc -3'
miRNA:   3'- gcuUCUUGGa------CUUCGGGAgGGugUCG- -5'
9121 3' -53.9 NC_002512.2 + 36314 0.68 0.944903
Target:  5'- gCGGAGGAUgaGAuccccacCCCUCCCaccACAGCg -3'
miRNA:   3'- -GCUUCUUGgaCUuc-----GGGAGGG---UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 36796 0.67 0.967229
Target:  5'- gCGGAGA---UGAAGCggcaCUCgCCGCAGCa -3'
miRNA:   3'- -GCUUCUuggACUUCGg---GAG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 37686 0.72 0.820883
Target:  5'- cCGAAGggUCc-GGGUCCUCCC-CAGCc -3'
miRNA:   3'- -GCUUCuuGGacUUCGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 37859 0.66 0.980191
Target:  5'- aGAAGGACC----GCCgCUCCCGC-GCc -3'
miRNA:   3'- gCUUCUUGGacuuCGG-GAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 38348 0.73 0.748507
Target:  5'- gCGggGAuccGCCggGucGCCCgacCCCACGGCc -3'
miRNA:   3'- -GCuuCU---UGGa-CuuCGGGa--GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 39443 0.66 0.985692
Target:  5'- uGGAGGucacguCCcggucggUGAcGGCCCgcUCCCGCAGCc -3'
miRNA:   3'- gCUUCUu-----GG-------ACU-UCGGG--AGGGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.