miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 43059 0.67 0.970206
Target:  5'- gCGcAGGGCCUcgccGAGGCaCCggUCCCGgGGCg -3'
miRNA:   3'- -GCuUCUUGGA----CUUCG-GG--AGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 43649 0.68 0.949177
Target:  5'- -cGAGGACCgGGAccucGCCCUCgguggcggCCGCGGCg -3'
miRNA:   3'- gcUUCUUGGaCUU----CGGGAG--------GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 43947 0.66 0.985858
Target:  5'- uCGuAGGccguCCUGAAGCCCUUCUcgucgaccCGGCa -3'
miRNA:   3'- -GCuUCUu---GGACUUCGGGAGGGu-------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 44083 0.68 0.953225
Target:  5'- aGAGGAGCUcgGGguaGGCCCUCCCcucGCc -3'
miRNA:   3'- gCUUCUUGGa-CU---UCGGGAGGGuguCG- -5'
9121 3' -53.9 NC_002512.2 + 44373 0.71 0.860959
Target:  5'- uCGAAGAGCg-GcAGGCCC-CCgCGCAGCc -3'
miRNA:   3'- -GCUUCUUGgaC-UUCGGGaGG-GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 44852 0.66 0.98744
Target:  5'- -cAGGAuCCUaGGGCUCUCCCcgacgACGGCg -3'
miRNA:   3'- gcUUCUuGGAcUUCGGGAGGG-----UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 45479 0.7 0.889442
Target:  5'- aCGGAGAagGCC-GAGcGCCCcCCgGCGGCg -3'
miRNA:   3'- -GCUUCU--UGGaCUU-CGGGaGGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 45641 0.68 0.959953
Target:  5'- cCGAGGGAuCCggagGAAGUUCgaugacgcggacCCCACAGCu -3'
miRNA:   3'- -GCUUCUU-GGa---CUUCGGGa-----------GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 48433 0.66 0.985858
Target:  5'- uCGAccGGAuCCUGAcgaagacgacGGUgaUCCCGCAGCu -3'
miRNA:   3'- -GCU--UCUuGGACU----------UCGggAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 49324 0.68 0.944903
Target:  5'- -aGAGAGCCaccGGAGCCCg-CCGCAaGCg -3'
miRNA:   3'- gcUUCUUGGa--CUUCGGGagGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 50740 0.7 0.902376
Target:  5'- uCGAGGAGCUgcuGGGCCuCUCCgGCgAGCu -3'
miRNA:   3'- -GCUUCUUGGac-UUCGG-GAGGgUG-UCG- -5'
9121 3' -53.9 NC_002512.2 + 54735 0.66 0.985858
Target:  5'- ---cGGACCUGAAGgCCUUCUGCGu- -3'
miRNA:   3'- gcuuCUUGGACUUCgGGAGGGUGUcg -5'
9121 3' -53.9 NC_002512.2 + 56585 0.66 0.97797
Target:  5'- gCGuuGGAGCCgaUGAcGGCCCUCCaGCGGa -3'
miRNA:   3'- -GCu-UCUUGG--ACU-UCGGGAGGgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 62376 0.77 0.539359
Target:  5'- uCGGAGAGCCgcaUGgcGCCCUCggaCACGGCc -3'
miRNA:   3'- -GCUUCUUGG---ACuuCGGGAGg--GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 62644 0.66 0.980191
Target:  5'- uGAccAGGACCUcucGCCCgaUCCCGCGGa -3'
miRNA:   3'- gCU--UCUUGGAcuuCGGG--AGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 63710 0.66 0.980191
Target:  5'- aCGggGAucuccuuguAgCUGAGGUCCUCCUu--GCg -3'
miRNA:   3'- -GCuuCU---------UgGACUUCGGGAGGGuguCG- -5'
9121 3' -53.9 NC_002512.2 + 63907 0.75 0.639503
Target:  5'- aCGAAGAACCgaccGCCC-CgCCGCAGCu -3'
miRNA:   3'- -GCUUCUUGGacuuCGGGaG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 65623 0.68 0.953225
Target:  5'- cCGAGGcgaucGACCcGAcGGCCCcCgCCACGGCg -3'
miRNA:   3'- -GCUUC-----UUGGaCU-UCGGGaG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 71170 0.66 0.985355
Target:  5'- aCGAAGAaggacacgucguccACCUcGGGCaCCUCCCcguccCGGCc -3'
miRNA:   3'- -GCUUCU--------------UGGAcUUCG-GGAGGGu----GUCG- -5'
9121 3' -53.9 NC_002512.2 + 72257 0.7 0.889442
Target:  5'- cCGcAGGugCagGAAGCCCUUCUuCAGCg -3'
miRNA:   3'- -GCuUCUugGa-CUUCGGGAGGGuGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.