Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9121 | 3' | -53.9 | NC_002512.2 | + | 43059 | 0.67 | 0.970206 |
Target: 5'- gCGcAGGGCCUcgccGAGGCaCCggUCCCGgGGCg -3' miRNA: 3'- -GCuUCUUGGA----CUUCG-GG--AGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 43649 | 0.68 | 0.949177 |
Target: 5'- -cGAGGACCgGGAccucGCCCUCgguggcggCCGCGGCg -3' miRNA: 3'- gcUUCUUGGaCUU----CGGGAG--------GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 43947 | 0.66 | 0.985858 |
Target: 5'- uCGuAGGccguCCUGAAGCCCUUCUcgucgaccCGGCa -3' miRNA: 3'- -GCuUCUu---GGACUUCGGGAGGGu-------GUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 44083 | 0.68 | 0.953225 |
Target: 5'- aGAGGAGCUcgGGguaGGCCCUCCCcucGCc -3' miRNA: 3'- gCUUCUUGGa-CU---UCGGGAGGGuguCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 44373 | 0.71 | 0.860959 |
Target: 5'- uCGAAGAGCg-GcAGGCCC-CCgCGCAGCc -3' miRNA: 3'- -GCUUCUUGgaC-UUCGGGaGG-GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 44852 | 0.66 | 0.98744 |
Target: 5'- -cAGGAuCCUaGGGCUCUCCCcgacgACGGCg -3' miRNA: 3'- gcUUCUuGGAcUUCGGGAGGG-----UGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 45479 | 0.7 | 0.889442 |
Target: 5'- aCGGAGAagGCC-GAGcGCCCcCCgGCGGCg -3' miRNA: 3'- -GCUUCU--UGGaCUU-CGGGaGGgUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 45641 | 0.68 | 0.959953 |
Target: 5'- cCGAGGGAuCCggagGAAGUUCgaugacgcggacCCCACAGCu -3' miRNA: 3'- -GCUUCUU-GGa---CUUCGGGa-----------GGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 48433 | 0.66 | 0.985858 |
Target: 5'- uCGAccGGAuCCUGAcgaagacgacGGUgaUCCCGCAGCu -3' miRNA: 3'- -GCU--UCUuGGACU----------UCGggAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 49324 | 0.68 | 0.944903 |
Target: 5'- -aGAGAGCCaccGGAGCCCg-CCGCAaGCg -3' miRNA: 3'- gcUUCUUGGa--CUUCGGGagGGUGU-CG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 50740 | 0.7 | 0.902376 |
Target: 5'- uCGAGGAGCUgcuGGGCCuCUCCgGCgAGCu -3' miRNA: 3'- -GCUUCUUGGac-UUCGG-GAGGgUG-UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 54735 | 0.66 | 0.985858 |
Target: 5'- ---cGGACCUGAAGgCCUUCUGCGu- -3' miRNA: 3'- gcuuCUUGGACUUCgGGAGGGUGUcg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 56585 | 0.66 | 0.97797 |
Target: 5'- gCGuuGGAGCCgaUGAcGGCCCUCCaGCGGa -3' miRNA: 3'- -GCu-UCUUGG--ACU-UCGGGAGGgUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 62376 | 0.77 | 0.539359 |
Target: 5'- uCGGAGAGCCgcaUGgcGCCCUCggaCACGGCc -3' miRNA: 3'- -GCUUCUUGG---ACuuCGGGAGg--GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 62644 | 0.66 | 0.980191 |
Target: 5'- uGAccAGGACCUcucGCCCgaUCCCGCGGa -3' miRNA: 3'- gCU--UCUUGGAcuuCGGG--AGGGUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 63710 | 0.66 | 0.980191 |
Target: 5'- aCGggGAucuccuuguAgCUGAGGUCCUCCUu--GCg -3' miRNA: 3'- -GCuuCU---------UgGACUUCGGGAGGGuguCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 63907 | 0.75 | 0.639503 |
Target: 5'- aCGAAGAACCgaccGCCC-CgCCGCAGCu -3' miRNA: 3'- -GCUUCUUGGacuuCGGGaG-GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 65623 | 0.68 | 0.953225 |
Target: 5'- cCGAGGcgaucGACCcGAcGGCCCcCgCCACGGCg -3' miRNA: 3'- -GCUUC-----UUGGaCU-UCGGGaG-GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 71170 | 0.66 | 0.985355 |
Target: 5'- aCGAAGAaggacacgucguccACCUcGGGCaCCUCCCcguccCGGCc -3' miRNA: 3'- -GCUUCU--------------UGGAcUUCG-GGAGGGu----GUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 72257 | 0.7 | 0.889442 |
Target: 5'- cCGcAGGugCagGAAGCCCUUCUuCAGCg -3' miRNA: 3'- -GCuUCUugGa-CUUCGGGAGGGuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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