miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 168122 0.66 0.982242
Target:  5'- aGGAGA----GggGCCCggCCGCGGCg -3'
miRNA:   3'- gCUUCUuggaCuuCGGGagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 164027 0.74 0.742766
Target:  5'- uGGAGAAcaccgacuuucagauCCUGGAGCUguaCUCUCGCGGCg -3'
miRNA:   3'- gCUUCUU---------------GGACUUCGG---GAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 158775 0.66 0.980191
Target:  5'- aGAAGAuCCUGgcGCUgguggCCCGgGGCg -3'
miRNA:   3'- gCUUCUuGGACuuCGGga---GGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 158548 0.67 0.967229
Target:  5'- uGguGGACCUGcugguGGGCCgCUCCUggcgcgACAGCg -3'
miRNA:   3'- gCuuCUUGGAC-----UUCGG-GAGGG------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 158152 0.67 0.970206
Target:  5'- gCGAcu-ACCUGAgcaccauccaGGCCCUCgggaCGCGGCu -3'
miRNA:   3'- -GCUucuUGGACU----------UCGGGAGg---GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 156114 0.67 0.970206
Target:  5'- uGAAGGccaAgCUGgcGCCCUUcaagcgcuaCCACGGCu -3'
miRNA:   3'- gCUUCU---UgGACuuCGGGAG---------GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 154931 0.66 0.985858
Target:  5'- gGgcGGACCgcucucgucccGucGCUCUCCCGCGGUc -3'
miRNA:   3'- gCuuCUUGGa----------CuuCGGGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 149632 0.76 0.599112
Target:  5'- gGGAGGACCgcacGGAGCCCggCCCGCAcGUc -3'
miRNA:   3'- gCUUCUUGGa---CUUCGGGa-GGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 148441 0.67 0.964048
Target:  5'- gGGAGGACggGGgccgGGCCC-CCCGCGGg -3'
miRNA:   3'- gCUUCUUGgaCU----UCGGGaGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 148255 0.66 0.98744
Target:  5'- gCGccGAGCCUGGacguggcgacGGCCCUggCCgACgAGCa -3'
miRNA:   3'- -GCuuCUUGGACU----------UCGGGA--GGgUG-UCG- -5'
9121 3' -53.9 NC_002512.2 + 146815 0.68 0.953225
Target:  5'- --cGGGACCUGGAGaCCUUCgCGC-GCg -3'
miRNA:   3'- gcuUCUUGGACUUC-GGGAGgGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 146468 0.7 0.896021
Target:  5'- cCGGAGAACCUcacccaccacGGAaaCC-CCCACGGCg -3'
miRNA:   3'- -GCUUCUUGGA----------CUUcgGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 145715 0.7 0.908503
Target:  5'- cCGccGAACCUGGaccgGGaCCUCCCGC-GCg -3'
miRNA:   3'- -GCuuCUUGGACU----UCgGGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 145475 0.68 0.949177
Target:  5'- -cGAGGACCUGuucgacCCCgUCCCGCAGa -3'
miRNA:   3'- gcUUCUUGGACuuc---GGG-AGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 145372 0.67 0.97557
Target:  5'- aCGAGGGcuacgACUgGGAGCCCga-CGCGGCg -3'
miRNA:   3'- -GCUUCU-----UGGaCUUCGGGaggGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 143704 0.72 0.820883
Target:  5'- aCGGAGGGCCgaccuCCagCUCCCGCAGCa -3'
miRNA:   3'- -GCUUCUUGGacuucGG--GAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 140201 0.66 0.982242
Target:  5'- uCGAGuucGGCCUGccGCUCUCCCcgaGGCa -3'
miRNA:   3'- -GCUUc--UUGGACuuCGGGAGGGug-UCG- -5'
9121 3' -53.9 NC_002512.2 + 139207 0.68 0.957051
Target:  5'- -cGAGGACCU--GGCCCUggcCgCCGCGGCc -3'
miRNA:   3'- gcUUCUUGGAcuUCGGGA---G-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 137602 0.77 0.533484
Target:  5'- --cGGAGCUUGAAGCagcggaaguauucguUCUCCCACAGCu -3'
miRNA:   3'- gcuUCUUGGACUUCG---------------GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 136782 0.66 0.97797
Target:  5'- aCGAAGAACaggcaGAAGCCCaggaacgaCgCGCGGCu -3'
miRNA:   3'- -GCUUCUUGga---CUUCGGGa-------GgGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.