Results 21 - 40 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9121 | 3' | -53.9 | NC_002512.2 | + | 207523 | 0.71 | 0.837466 |
Target: 5'- aCGAGGAcgggGCCgc--GUCCUCCCGCuGCg -3' miRNA: 3'- -GCUUCU----UGGacuuCGGGAGGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 206977 | 0.69 | 0.940399 |
Target: 5'- gGAAGaAGCCgcccgGGAuGCCCguggCCCGCGGg -3' miRNA: 3'- gCUUC-UUGGa----CUU-CGGGa---GGGUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 201823 | 0.69 | 0.935665 |
Target: 5'- cCGccGcGCCcgGggGCuCCUUCCGCGGCc -3' miRNA: 3'- -GCuuCuUGGa-CuuCG-GGAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 200220 | 0.7 | 0.896021 |
Target: 5'- cCGAGGAGCC-GGAGCCCgaggagCCCgACGa- -3' miRNA: 3'- -GCUUCUUGGaCUUCGGGa-----GGG-UGUcg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 197843 | 0.66 | 0.984128 |
Target: 5'- uCGAGGGGCggcggGAGGCCCUCUucaaccgacugCGgGGCa -3' miRNA: 3'- -GCUUCUUGga---CUUCGGGAGG-----------GUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 195866 | 0.66 | 0.97797 |
Target: 5'- uCGcGGAACCUGAGGaCCUCCgucguCAGg -3' miRNA: 3'- -GCuUCUUGGACUUCgGGAGGgu---GUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 194634 | 0.66 | 0.98744 |
Target: 5'- gCGggGGACCUGcccGUCCUCUUcuccgaucggGCGGUc -3' miRNA: 3'- -GCuuCUUGGACuu-CGGGAGGG----------UGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 194594 | 0.68 | 0.959953 |
Target: 5'- aGAAGcuGACCgUGAGGCCCagauacacaaaCCACGGUa -3' miRNA: 3'- gCUUC--UUGG-ACUUCGGGag---------GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 193669 | 0.67 | 0.967229 |
Target: 5'- aGggGAcCCaGGAGggCUCCCGCAGUc -3' miRNA: 3'- gCuuCUuGGaCUUCggGAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 191831 | 0.69 | 0.925499 |
Target: 5'- gCGggGucCUUGc-GCCCUCCCACcccuccGGCg -3' miRNA: 3'- -GCuuCuuGGACuuCGGGAGGGUG------UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 191710 | 0.67 | 0.969917 |
Target: 5'- aGAAGuAUCUGAAGCCCaucaugaCCCgaaggaaaaccgaACGGCu -3' miRNA: 3'- gCUUCuUGGACUUCGGGa------GGG-------------UGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 190917 | 0.67 | 0.976793 |
Target: 5'- aGAGGGACCUGAcgaggcagcggaaccAGaCCCgggcgcacgcgggcgCCCGCcGCg -3' miRNA: 3'- gCUUCUUGGACU---------------UC-GGGa--------------GGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 190102 | 0.67 | 0.964048 |
Target: 5'- uGcGGGACCUcauccGGCgCUUCCACGGCa -3' miRNA: 3'- gCuUCUUGGAcu---UCGgGAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 186307 | 0.69 | 0.935665 |
Target: 5'- -uGAGGAUCaGAGGCUcguCUCCCAUAGUg -3' miRNA: 3'- gcUUCUUGGaCUUCGG---GAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 185667 | 0.69 | 0.927607 |
Target: 5'- gCGggGAuCCUGAAGUCCUucggucucuucugcgCCuCGCuGCg -3' miRNA: 3'- -GCuuCUuGGACUUCGGGA---------------GG-GUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 184994 | 0.66 | 0.984128 |
Target: 5'- aCGuGGAGCgCUGcGGCCCggugCCgcugUACAGCg -3' miRNA: 3'- -GCuUCUUG-GACuUCGGGa---GG----GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 182321 | 0.68 | 0.960657 |
Target: 5'- -cGAGAuCUUGAAGCucgCCUCCCGCGuGUa -3' miRNA: 3'- gcUUCUuGGACUUCG---GGAGGGUGU-CG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 182137 | 0.67 | 0.966296 |
Target: 5'- uGAAGGcgugcagcuccacgAUCUGuuccGAGCCCUCCUcccgcgagGCGGCg -3' miRNA: 3'- gCUUCU--------------UGGAC----UUCGGGAGGG--------UGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 181628 | 0.66 | 0.98744 |
Target: 5'- gGggGAACC-GAuGUCgUCCCACuuguuGGCc -3' miRNA: 3'- gCuuCUUGGaCUuCGGgAGGGUG-----UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 168720 | 0.67 | 0.972984 |
Target: 5'- uCGggGAGCUcGu-GCCCUCCUugcaGGCc -3' miRNA: 3'- -GCuuCUUGGaCuuCGGGAGGGug--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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