miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 207523 0.71 0.837466
Target:  5'- aCGAGGAcgggGCCgc--GUCCUCCCGCuGCg -3'
miRNA:   3'- -GCUUCU----UGGacuuCGGGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 206977 0.69 0.940399
Target:  5'- gGAAGaAGCCgcccgGGAuGCCCguggCCCGCGGg -3'
miRNA:   3'- gCUUC-UUGGa----CUU-CGGGa---GGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 201823 0.69 0.935665
Target:  5'- cCGccGcGCCcgGggGCuCCUUCCGCGGCc -3'
miRNA:   3'- -GCuuCuUGGa-CuuCG-GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 200220 0.7 0.896021
Target:  5'- cCGAGGAGCC-GGAGCCCgaggagCCCgACGa- -3'
miRNA:   3'- -GCUUCUUGGaCUUCGGGa-----GGG-UGUcg -5'
9121 3' -53.9 NC_002512.2 + 197843 0.66 0.984128
Target:  5'- uCGAGGGGCggcggGAGGCCCUCUucaaccgacugCGgGGCa -3'
miRNA:   3'- -GCUUCUUGga---CUUCGGGAGG-----------GUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 195866 0.66 0.97797
Target:  5'- uCGcGGAACCUGAGGaCCUCCgucguCAGg -3'
miRNA:   3'- -GCuUCUUGGACUUCgGGAGGgu---GUCg -5'
9121 3' -53.9 NC_002512.2 + 194634 0.66 0.98744
Target:  5'- gCGggGGACCUGcccGUCCUCUUcuccgaucggGCGGUc -3'
miRNA:   3'- -GCuuCUUGGACuu-CGGGAGGG----------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 194594 0.68 0.959953
Target:  5'- aGAAGcuGACCgUGAGGCCCagauacacaaaCCACGGUa -3'
miRNA:   3'- gCUUC--UUGG-ACUUCGGGag---------GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 193669 0.67 0.967229
Target:  5'- aGggGAcCCaGGAGggCUCCCGCAGUc -3'
miRNA:   3'- gCuuCUuGGaCUUCggGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 191831 0.69 0.925499
Target:  5'- gCGggGucCUUGc-GCCCUCCCACcccuccGGCg -3'
miRNA:   3'- -GCuuCuuGGACuuCGGGAGGGUG------UCG- -5'
9121 3' -53.9 NC_002512.2 + 191710 0.67 0.969917
Target:  5'- aGAAGuAUCUGAAGCCCaucaugaCCCgaaggaaaaccgaACGGCu -3'
miRNA:   3'- gCUUCuUGGACUUCGGGa------GGG-------------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 190917 0.67 0.976793
Target:  5'- aGAGGGACCUGAcgaggcagcggaaccAGaCCCgggcgcacgcgggcgCCCGCcGCg -3'
miRNA:   3'- gCUUCUUGGACU---------------UC-GGGa--------------GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 190102 0.67 0.964048
Target:  5'- uGcGGGACCUcauccGGCgCUUCCACGGCa -3'
miRNA:   3'- gCuUCUUGGAcu---UCGgGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 186307 0.69 0.935665
Target:  5'- -uGAGGAUCaGAGGCUcguCUCCCAUAGUg -3'
miRNA:   3'- gcUUCUUGGaCUUCGG---GAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 185667 0.69 0.927607
Target:  5'- gCGggGAuCCUGAAGUCCUucggucucuucugcgCCuCGCuGCg -3'
miRNA:   3'- -GCuuCUuGGACUUCGGGA---------------GG-GUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 184994 0.66 0.984128
Target:  5'- aCGuGGAGCgCUGcGGCCCggugCCgcugUACAGCg -3'
miRNA:   3'- -GCuUCUUG-GACuUCGGGa---GG----GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 182321 0.68 0.960657
Target:  5'- -cGAGAuCUUGAAGCucgCCUCCCGCGuGUa -3'
miRNA:   3'- gcUUCUuGGACUUCG---GGAGGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 182137 0.67 0.966296
Target:  5'- uGAAGGcgugcagcuccacgAUCUGuuccGAGCCCUCCUcccgcgagGCGGCg -3'
miRNA:   3'- gCUUCU--------------UGGAC----UUCGGGAGGG--------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 181628 0.66 0.98744
Target:  5'- gGggGAACC-GAuGUCgUCCCACuuguuGGCc -3'
miRNA:   3'- gCuuCUUGGaCUuCGGgAGGGUG-----UCG- -5'
9121 3' -53.9 NC_002512.2 + 168720 0.67 0.972984
Target:  5'- uCGggGAGCUcGu-GCCCUCCUugcaGGCc -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGAGGGug--UCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.