miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 229882 0.67 0.97557
Target:  5'- aGGAGGACC---GGCCCUCaCgACGGg -3'
miRNA:   3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 229694 0.69 0.930699
Target:  5'- aCGggGGGCCaGGgcAGCCCacgCCCucCGGCc -3'
miRNA:   3'- -GCuuCUUGGaCU--UCGGGa--GGGu-GUCG- -5'
9121 3' -53.9 NC_002512.2 + 227187 0.68 0.949177
Target:  5'- cCGggGGAgCgGcAGGCgCUCCCGCGcGCg -3'
miRNA:   3'- -GCuuCUUgGaC-UUCGgGAGGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 226504 0.66 0.98744
Target:  5'- -uGGGGACCUGuGGGCCC-CgCGgAGCg -3'
miRNA:   3'- gcUUCUUGGAC-UUCGGGaGgGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 226227 0.66 0.985858
Target:  5'- cCGggGAGCCgGAGcgaucuuaucGCCa--CCGCGGCc -3'
miRNA:   3'- -GCuuCUUGGaCUU----------CGGgagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 224529 0.66 0.983205
Target:  5'- cCGGAGGACCacaggucccgggGAccauGGCCUUCCCcaucgauccccaccGCGGCu -3'
miRNA:   3'- -GCUUCUUGGa-----------CU----UCGGGAGGG--------------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 223524 0.69 0.930699
Target:  5'- gCGGAGAACggcacgcGCCCgcggCCCGCGGCc -3'
miRNA:   3'- -GCUUCUUGgacuu--CGGGa---GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 222355 0.66 0.98744
Target:  5'- gGAGGAGCggcacgGGGccGCCUUCCC-CGGCg -3'
miRNA:   3'- gCUUCUUGga----CUU--CGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 221618 0.66 0.98744
Target:  5'- gCGAGGAgggagcggguccACCcgGcGGCCCUgcUCUACGGCg -3'
miRNA:   3'- -GCUUCU------------UGGa-CuUCGGGA--GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 220312 0.66 0.982242
Target:  5'- cCGggGGGCCgGggGCCgggCUCCgGgGGg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGG---GAGGgUgUCg -5'
9121 3' -53.9 NC_002512.2 + 219364 0.66 0.984128
Target:  5'- gCGAGGu-CCUGc-GCCucugCUCCCugGGCu -3'
miRNA:   3'- -GCUUCuuGGACuuCGG----GAGGGugUCG- -5'
9121 3' -53.9 NC_002512.2 + 217756 0.72 0.828431
Target:  5'- aGAAGAACCccGGGCCCgUCCCcgucgccggggucGCGGCc -3'
miRNA:   3'- gCUUCUUGGacUUCGGG-AGGG-------------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 216640 0.74 0.699752
Target:  5'- uGGuAGAACaCgcgGAAGUCgUCCCGCAGCa -3'
miRNA:   3'- gCU-UCUUG-Ga--CUUCGGgAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 216573 0.67 0.967229
Target:  5'- gCGgcGGGCCagcGAGGCCaggCCCugGGUg -3'
miRNA:   3'- -GCuuCUUGGa--CUUCGGga-GGGugUCG- -5'
9121 3' -53.9 NC_002512.2 + 213856 0.66 0.982242
Target:  5'- aGAAGAuCCcGcuGCCCUucCCCACccGGCg -3'
miRNA:   3'- gCUUCUuGGaCuuCGGGA--GGGUG--UCG- -5'
9121 3' -53.9 NC_002512.2 + 213663 0.67 0.970206
Target:  5'- aCGAugacGGAGgCggaggGGAGCCCggcgucgCCCGCGGUc -3'
miRNA:   3'- -GCU----UCUUgGa----CUUCGGGa------GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 213047 0.67 0.972984
Target:  5'- gCGggGGAUCgaGAucGCCCUgCC-CAGCc -3'
miRNA:   3'- -GCuuCUUGGa-CUu-CGGGAgGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 213007 0.71 0.860959
Target:  5'- cCGucGGGCCcGggGCCCUCUCGaGGUg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 211787 0.72 0.829262
Target:  5'- cCGGGuGGCCgcgGggGCCgUCCCGCcGCg -3'
miRNA:   3'- -GCUUcUUGGa--CuuCGGgAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 209197 0.68 0.960657
Target:  5'- aCGAGGAgaccgagcggcGCCUGcGGCCCg-UCACGGUc -3'
miRNA:   3'- -GCUUCU-----------UGGACuUCGGGagGGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.