miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 137602 0.77 0.533484
Target:  5'- --cGGAGCUUGAAGCagcggaaguauucguUCUCCCACAGCu -3'
miRNA:   3'- gcuUCUUGGACUUCG---------------GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 44373 0.71 0.860959
Target:  5'- uCGAAGAGCg-GcAGGCCC-CCgCGCAGCc -3'
miRNA:   3'- -GCUUCUUGgaC-UUCGGGaGG-GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18027 0.71 0.860959
Target:  5'- cCGAcGAugCUGAGGUCCUUCUccuCGGCc -3'
miRNA:   3'- -GCUuCUugGACUUCGGGAGGGu--GUCG- -5'
9121 3' -53.9 NC_002512.2 + 19163 0.71 0.857928
Target:  5'- uCGAAGGGCUcgucgacgcugagGAAGCgggugaUCUCCCGCGGCg -3'
miRNA:   3'- -GCUUCUUGGa------------CUUCG------GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 80498 0.71 0.853322
Target:  5'- uCGAGGAGCC-GGAGUCCUgcgucCCCGC-GCc -3'
miRNA:   3'- -GCUUCUUGGaCUUCGGGA-----GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 5362 0.71 0.853322
Target:  5'- --cGGGACCUGuGGUCCUCCgGCucuGGCg -3'
miRNA:   3'- gcuUCUUGGACuUCGGGAGGgUG---UCG- -5'
9121 3' -53.9 NC_002512.2 + 35326 0.71 0.853322
Target:  5'- uGAGGGGCac--GGCCUUCCCGgGGCg -3'
miRNA:   3'- gCUUCUUGgacuUCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 82200 0.71 0.845488
Target:  5'- cCGucGGGCC-GgcGUCCUCCCGgGGCg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 81444 0.71 0.837466
Target:  5'- gCGggGGGCCcGGcccccGUCCUCCCcCGGCg -3'
miRNA:   3'- -GCuuCUUGGaCUu----CGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 24517 0.72 0.829262
Target:  5'- ---uGGGCCUGAccGCCUUCCCGguCAGCg -3'
miRNA:   3'- gcuuCUUGGACUu-CGGGAGGGU--GUCG- -5'
9121 3' -53.9 NC_002512.2 + 37686 0.72 0.820883
Target:  5'- cCGAAGggUCc-GGGUCCUCCC-CAGCc -3'
miRNA:   3'- -GCUUCuuGGacUUCGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 86795 0.72 0.812336
Target:  5'- gGGAGAgcGCCUGGAGCCggUgUACGGCu -3'
miRNA:   3'- gCUUCU--UGGACUUCGGgaGgGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 2957 0.72 0.812336
Target:  5'- uGgcGAGCUUGAGcGCCUUCUCGCGGg -3'
miRNA:   3'- gCuuCUUGGACUU-CGGGAGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 9621 0.73 0.785771
Target:  5'- cCGAcGAACUUGAGGUUCUCggCGCAGCa -3'
miRNA:   3'- -GCUuCUUGGACUUCGGGAGg-GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 38348 0.73 0.748507
Target:  5'- gCGggGAuccGCCggGucGCCCgacCCCACGGCc -3'
miRNA:   3'- -GCuuCU---UGGa-CuuCGGGa--GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18120 0.73 0.748507
Target:  5'- ---cGGGCCUccacGUCCUCCCGCAGCg -3'
miRNA:   3'- gcuuCUUGGAcuu-CGGGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 9429 0.75 0.659695
Target:  5'- gCGAAGAACUugcccgUGGAGCCCacguagagcUCCgGCGGCu -3'
miRNA:   3'- -GCUUCUUGG------ACUUCGGG---------AGGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 63907 0.75 0.639503
Target:  5'- aCGAAGAACCgaccGCCC-CgCCGCAGCu -3'
miRNA:   3'- -GCUUCUUGGacuuCGGGaG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 62376 0.77 0.539359
Target:  5'- uCGGAGAGCCgcaUGgcGCCCUCggaCACGGCc -3'
miRNA:   3'- -GCUUCUUGG---ACuuCGGGAGg--GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 74044 0.79 0.445062
Target:  5'- aGggGcACCuUGAAGCCCUCCCgGgAGCg -3'
miRNA:   3'- gCuuCuUGG-ACUUCGGGAGGG-UgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.