miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 15600 0.66 0.982044
Target:  5'- aCGAAGG---UGAAGCCCUCgggccaggccaggCgACAGCg -3'
miRNA:   3'- -GCUUCUuggACUUCGGGAG-------------GgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 140201 0.66 0.982242
Target:  5'- uCGAGuucGGCCUGccGCUCUCCCcgaGGCa -3'
miRNA:   3'- -GCUUc--UUGGACuuCGGGAGGGug-UCG- -5'
9121 3' -53.9 NC_002512.2 + 62644 0.66 0.980191
Target:  5'- uGAccAGGACCUcucGCCCgaUCCCGCGGa -3'
miRNA:   3'- gCU--UCUUGGAcuuCGGG--AGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 37859 0.66 0.980191
Target:  5'- aGAAGGACC----GCCgCUCCCGC-GCc -3'
miRNA:   3'- gCUUCUUGGacuuCGG-GAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 29713 0.66 0.982242
Target:  5'- gGAGGAGCCcaugaccgUGucGCCCUaCCgugGCGGCg -3'
miRNA:   3'- gCUUCUUGG--------ACuuCGGGAgGG---UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 134308 0.66 0.984128
Target:  5'- uCGAGGAcgucGCC-GggGCCggcgccgacggaCUCgCCGCGGCc -3'
miRNA:   3'- -GCUUCU----UGGaCuuCGG------------GAG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 43947 0.66 0.985858
Target:  5'- uCGuAGGccguCCUGAAGCCCUUCUcgucgaccCGGCa -3'
miRNA:   3'- -GCuUCUu---GGACUUCGGGAGGGu-------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 71170 0.66 0.985355
Target:  5'- aCGAAGAaggacacgucguccACCUcGGGCaCCUCCCcguccCGGCc -3'
miRNA:   3'- -GCUUCU--------------UGGAcUUCG-GGAGGGu----GUCG- -5'
9121 3' -53.9 NC_002512.2 + 54735 0.66 0.985858
Target:  5'- ---cGGACCUGAAGgCCUUCUGCGu- -3'
miRNA:   3'- gcuuCUUGGACUUCgGGAGGGUGUcg -5'
9121 3' -53.9 NC_002512.2 + 14226 0.66 0.983763
Target:  5'- gGAAGcgguagcacuuCUUGAcGGCCCgcagcCCCACGGCg -3'
miRNA:   3'- gCUUCuu---------GGACU-UCGGGa----GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 39443 0.66 0.985692
Target:  5'- uGGAGGucacguCCcggucggUGAcGGCCCgcUCCCGCAGCc -3'
miRNA:   3'- gCUUCUu-----GG-------ACU-UCGGG--AGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18492 0.66 0.980191
Target:  5'- uCGAAGAAgCgGuuGCgCCUCuucuuCCGCAGCa -3'
miRNA:   3'- -GCUUCUUgGaCuuCG-GGAG-----GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 56585 0.66 0.97797
Target:  5'- gCGuuGGAGCCgaUGAcGGCCCUCCaGCGGa -3'
miRNA:   3'- -GCu-UCUUGG--ACU-UCGGGAGGgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 110944 0.66 0.984128
Target:  5'- uGGAGAACaCcGggGCCagcgCCguCAGCa -3'
miRNA:   3'- gCUUCUUG-GaCuuCGGga--GGguGUCG- -5'
9121 3' -53.9 NC_002512.2 + 13463 0.66 0.985858
Target:  5'- gCGgcGAGCCUGgcGUCCccggaCCUGCuGCg -3'
miRNA:   3'- -GCuuCUUGGACuuCGGGa----GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 63710 0.66 0.980191
Target:  5'- aCGggGAucuccuuguAgCUGAGGUCCUCCUu--GCg -3'
miRNA:   3'- -GCuuCU---------UgGACUUCGGGAGGGuguCG- -5'
9121 3' -53.9 NC_002512.2 + 136782 0.66 0.97797
Target:  5'- aCGAAGAACaggcaGAAGCCCaggaacgaCgCGCGGCu -3'
miRNA:   3'- -GCUUCUUGga---CUUCGGGa-------GgGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 48433 0.66 0.985858
Target:  5'- uCGAccGGAuCCUGAcgaagacgacGGUgaUCCCGCAGCu -3'
miRNA:   3'- -GCU--UCUuGGACU----------UCGggAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 116819 0.66 0.984128
Target:  5'- uCGucGAccGCCU--GGCCCUCgUGCGGCu -3'
miRNA:   3'- -GCuuCU--UGGAcuUCGGGAGgGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 7069 0.66 0.982044
Target:  5'- gGAAGucgcAGCCgu-GGCUCUCCCAguuccucCAGCg -3'
miRNA:   3'- gCUUC----UUGGacuUCGGGAGGGU-------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.