miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 106810 1.13 0.004066
Target:  5'- uCGAAGAACCUGAAGCCCUCCCACAGCa -3'
miRNA:   3'- -GCUUCUUGGACUUCGGGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 134205 0.8 0.384828
Target:  5'- gGGAGAucgACCUGAAgGCCC-CCUACAGCc -3'
miRNA:   3'- gCUUCU---UGGACUU-CGGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 74044 0.79 0.445062
Target:  5'- aGggGcACCuUGAAGCCCUCCCgGgAGCg -3'
miRNA:   3'- gCuuCuUGG-ACUUCGGGAGGG-UgUCG- -5'
9121 3' -53.9 NC_002512.2 + 95159 0.78 0.510221
Target:  5'- -cGAGGACC-GGAGCCUUCCCcACGGCc -3'
miRNA:   3'- gcUUCUUGGaCUUCGGGAGGG-UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 137602 0.77 0.533484
Target:  5'- --cGGAGCUUGAAGCagcggaaguauucguUCUCCCACAGCu -3'
miRNA:   3'- gcuUCUUGGACUUCG---------------GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 62376 0.77 0.539359
Target:  5'- uCGGAGAGCCgcaUGgcGCCCUCggaCACGGCc -3'
miRNA:   3'- -GCUUCUUGG---ACuuCGGGAGg--GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 127365 0.76 0.57903
Target:  5'- -cGGGGGCCUGAcccccgacGGCCgcgaCUCCCGCGGCg -3'
miRNA:   3'- gcUUCUUGGACU--------UCGG----GAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 149632 0.76 0.599112
Target:  5'- gGGAGGACCgcacGGAGCCCggCCCGCAcGUc -3'
miRNA:   3'- gCUUCUUGGa---CUUCGGGa-GGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 63907 0.75 0.639503
Target:  5'- aCGAAGAACCgaccGCCC-CgCCGCAGCu -3'
miRNA:   3'- -GCUUCUUGGacuuCGGGaG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 9429 0.75 0.659695
Target:  5'- gCGAAGAACUugcccgUGGAGCCCacguagagcUCCgGCGGCu -3'
miRNA:   3'- -GCUUCUUGG------ACUUCGGG---------AGGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 128419 0.75 0.6798
Target:  5'- gCGggGucGCC-GGAGCCCUCCuCGCGGg -3'
miRNA:   3'- -GCuuCu-UGGaCUUCGGGAGG-GUGUCg -5'
9121 3' -53.9 NC_002512.2 + 216640 0.74 0.699752
Target:  5'- uGGuAGAACaCgcgGAAGUCgUCCCGCAGCa -3'
miRNA:   3'- gCU-UCUUG-Ga--CUUCGGgAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 102370 0.74 0.718502
Target:  5'- cCGGAGGuCCUGGAGCCggacgaggggaugCUCCCGCccgagGGCg -3'
miRNA:   3'- -GCUUCUuGGACUUCGG-------------GAGGGUG-----UCG- -5'
9121 3' -53.9 NC_002512.2 + 136346 0.74 0.719482
Target:  5'- aCGguGGGCCcgcUGAcGUUCUCCCACAGCu -3'
miRNA:   3'- -GCuuCUUGG---ACUuCGGGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 108441 0.74 0.719482
Target:  5'- -cGGGGGCCggGggGuCCCUCCCcggGCGGCg -3'
miRNA:   3'- gcUUCUUGGa-CuuC-GGGAGGG---UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 164027 0.74 0.742766
Target:  5'- uGGAGAAcaccgacuuucagauCCUGGAGCUguaCUCUCGCGGCg -3'
miRNA:   3'- gCUUCUU---------------GGACUUCGG---GAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18120 0.73 0.748507
Target:  5'- ---cGGGCCUccacGUCCUCCCGCAGCg -3'
miRNA:   3'- gcuuCUUGGAcuu-CGGGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 38348 0.73 0.748507
Target:  5'- gCGggGAuccGCCggGucGCCCgacCCCACGGCc -3'
miRNA:   3'- -GCuuCU---UGGa-CuuCGGGa--GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 118578 0.73 0.757995
Target:  5'- uCGAaagGGAGCCgcgaucgGcGGCCCUcucCCCGCGGCg -3'
miRNA:   3'- -GCU---UCUUGGa------CuUCGGGA---GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 9621 0.73 0.785771
Target:  5'- cCGAcGAACUUGAGGUUCUCggCGCAGCa -3'
miRNA:   3'- -GCUuCUUGGACUUCGGGAGg-GUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.