miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 291 0.69 0.930699
Target:  5'- aCGggGGGCCaGGgcAGCCCacgCCCucCGGCc -3'
miRNA:   3'- -GCuuCUUGGaCU--UCGGGa--GGGu-GUCG- -5'
9121 3' -53.9 NC_002512.2 + 479 0.67 0.97557
Target:  5'- aGGAGGACC---GGCCCUCaCgACGGg -3'
miRNA:   3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 1743 0.68 0.957051
Target:  5'- gCGu-GGACCUG-AGCUCgcgCCCGuCGGCg -3'
miRNA:   3'- -GCuuCUUGGACuUCGGGa--GGGU-GUCG- -5'
9121 3' -53.9 NC_002512.2 + 2452 0.7 0.908503
Target:  5'- gCGAAGGugACCgc-GGCCCgcgCCCGCGcGCg -3'
miRNA:   3'- -GCUUCU--UGGacuUCGGGa--GGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 2701 0.67 0.97557
Target:  5'- gGGAGcGCCUGccGCUC-CCC-CGGCu -3'
miRNA:   3'- gCUUCuUGGACuuCGGGaGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 2957 0.72 0.812336
Target:  5'- uGgcGAGCUUGAGcGCCUUCUCGCGGg -3'
miRNA:   3'- gCuuCUUGGACUU-CGGGAGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 5051 0.67 0.97557
Target:  5'- uGGAGGuauacGCgUccAGCCCgCCCGCGGCg -3'
miRNA:   3'- gCUUCU-----UGgAcuUCGGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 5362 0.71 0.853322
Target:  5'- --cGGGACCUGuGGUCCUCCgGCucuGGCg -3'
miRNA:   3'- gcuUCUUGGACuUCGGGAGGgUG---UCG- -5'
9121 3' -53.9 NC_002512.2 + 6548 0.69 0.930699
Target:  5'- aGAAGAcgaACCUGAGggucccGUCCUCCCgaccguucACGGUg -3'
miRNA:   3'- gCUUCU---UGGACUU------CGGGAGGG--------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 7069 0.66 0.982044
Target:  5'- gGAAGucgcAGCCgu-GGCUCUCCCAguuccucCAGCg -3'
miRNA:   3'- gCUUC----UUGGacuUCGGGAGGGU-------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 9429 0.75 0.659695
Target:  5'- gCGAAGAACUugcccgUGGAGCCCacguagagcUCCgGCGGCu -3'
miRNA:   3'- -GCUUCUUGG------ACUUCGGG---------AGGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 9555 0.66 0.98744
Target:  5'- aCGAGGccguccGGCCccccGGAGCCCggCCCcCGGCc -3'
miRNA:   3'- -GCUUC------UUGGa---CUUCGGGa-GGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 9621 0.73 0.785771
Target:  5'- cCGAcGAACUUGAGGUUCUCggCGCAGCa -3'
miRNA:   3'- -GCUuCUUGGACUUCGGGAGg-GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 10828 0.69 0.940399
Target:  5'- uCGAAGc-CCgcggGGAGCCCcgCgCCGCGGCc -3'
miRNA:   3'- -GCUUCuuGGa---CUUCGGGa-G-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 10951 0.68 0.960657
Target:  5'- aCGAGGAcGCC-GgcGCCCUCgggCCagGCAGCg -3'
miRNA:   3'- -GCUUCU-UGGaCuuCGGGAG---GG--UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 12739 0.69 0.930699
Target:  5'- uGGAGAGCCUGcGGCgCaagcugggCCCGCuGCu -3'
miRNA:   3'- gCUUCUUGGACuUCGgGa-------GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 13463 0.66 0.985858
Target:  5'- gCGgcGAGCCUGgcGUCCccggaCCUGCuGCg -3'
miRNA:   3'- -GCuuCUUGGACuuCGGGa----GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 14226 0.66 0.983763
Target:  5'- gGAAGcgguagcacuuCUUGAcGGCCCgcagcCCCACGGCg -3'
miRNA:   3'- gCUUCuu---------GGACU-UCGGGa----GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 15600 0.66 0.982044
Target:  5'- aCGAAGG---UGAAGCCCUCgggccaggccaggCgACAGCg -3'
miRNA:   3'- -GCUUCUuggACUUCGGGAG-------------GgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 16880 0.67 0.97557
Target:  5'- uCGAgAGGGCCccGGGCCCgacggCCGCGGCg -3'
miRNA:   3'- -GCU-UCUUGGacUUCGGGag---GGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.