Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9121 | 3' | -53.9 | NC_002512.2 | + | 37686 | 0.72 | 0.820883 |
Target: 5'- cCGAAGggUCc-GGGUCCUCCC-CAGCc -3' miRNA: 3'- -GCUUCuuGGacUUCGGGAGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 24517 | 0.72 | 0.829262 |
Target: 5'- ---uGGGCCUGAccGCCUUCCCGguCAGCg -3' miRNA: 3'- gcuuCUUGGACUu-CGGGAGGGU--GUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 81444 | 0.71 | 0.837466 |
Target: 5'- gCGggGGGCCcGGcccccGUCCUCCCcCGGCg -3' miRNA: 3'- -GCuuCUUGGaCUu----CGGGAGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 82200 | 0.71 | 0.845488 |
Target: 5'- cCGucGGGCC-GgcGUCCUCCCGgGGCg -3' miRNA: 3'- -GCuuCUUGGaCuuCGGGAGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 35326 | 0.71 | 0.853322 |
Target: 5'- uGAGGGGCac--GGCCUUCCCGgGGCg -3' miRNA: 3'- gCUUCUUGgacuUCGGGAGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 5362 | 0.71 | 0.853322 |
Target: 5'- --cGGGACCUGuGGUCCUCCgGCucuGGCg -3' miRNA: 3'- gcuUCUUGGACuUCGGGAGGgUG---UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 80498 | 0.71 | 0.853322 |
Target: 5'- uCGAGGAGCC-GGAGUCCUgcgucCCCGC-GCc -3' miRNA: 3'- -GCUUCUUGGaCUUCGGGA-----GGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 19163 | 0.71 | 0.857928 |
Target: 5'- uCGAAGGGCUcgucgacgcugagGAAGCgggugaUCUCCCGCGGCg -3' miRNA: 3'- -GCUUCUUGGa------------CUUCG------GGAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 18027 | 0.71 | 0.860959 |
Target: 5'- cCGAcGAugCUGAGGUCCUUCUccuCGGCc -3' miRNA: 3'- -GCUuCUugGACUUCGGGAGGGu--GUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 44373 | 0.71 | 0.860959 |
Target: 5'- uCGAAGAGCg-GcAGGCCC-CCgCGCAGCc -3' miRNA: 3'- -GCUUCUUGgaC-UUCGGGaGG-GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 29562 | 0.71 | 0.875625 |
Target: 5'- gGAGGAcGCCggcggGAAGCCgCUCCCcgAgGGCg -3' miRNA: 3'- gCUUCU-UGGa----CUUCGG-GAGGG--UgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 72257 | 0.7 | 0.889442 |
Target: 5'- cCGcAGGugCagGAAGCCCUUCUuCAGCg -3' miRNA: 3'- -GCuUCUugGa-CUUCGGGAGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 45479 | 0.7 | 0.889442 |
Target: 5'- aCGGAGAagGCC-GAGcGCCCcCCgGCGGCg -3' miRNA: 3'- -GCUUCU--UGGaCUU-CGGGaGGgUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 50740 | 0.7 | 0.902376 |
Target: 5'- uCGAGGAGCUgcuGGGCCuCUCCgGCgAGCu -3' miRNA: 3'- -GCUUCUUGGac-UUCGG-GAGGgUG-UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 116599 | 0.7 | 0.902376 |
Target: 5'- -cGAGGGCggGAGGCCCg-CCGCGGCu -3' miRNA: 3'- gcUUCUUGgaCUUCGGGagGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 2452 | 0.7 | 0.908503 |
Target: 5'- gCGAAGGugACCgc-GGCCCgcgCCCGCGcGCg -3' miRNA: 3'- -GCUUCU--UGGacuUCGGGa--GGGUGU-CG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 33080 | 0.7 | 0.908503 |
Target: 5'- aGAAGGACUgGAGGCUgUCgCC-CAGCu -3' miRNA: 3'- gCUUCUUGGaCUUCGGgAG-GGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 22223 | 0.7 | 0.908503 |
Target: 5'- gGGAGAGCCcgGGAcGCCa--CCACGGCc -3' miRNA: 3'- gCUUCUUGGa-CUU-CGGgagGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 95957 | 0.69 | 0.9144 |
Target: 5'- gCGggGGG-CUGAGGCCCggguuggCGCAGCg -3' miRNA: 3'- -GCuuCUUgGACUUCGGGagg----GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 86126 | 0.69 | 0.920066 |
Target: 5'- gGAGGAggucgcggACCUgGAAGCCgaCgCCGCGGCc -3' miRNA: 3'- gCUUCU--------UGGA-CUUCGGgaG-GGUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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