miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 19163 0.71 0.857928
Target:  5'- uCGAAGGGCUcgucgacgcugagGAAGCgggugaUCUCCCGCGGCg -3'
miRNA:   3'- -GCUUCUUGGa------------CUUCG------GGAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 18027 0.71 0.860959
Target:  5'- cCGAcGAugCUGAGGUCCUUCUccuCGGCc -3'
miRNA:   3'- -GCUuCUugGACUUCGGGAGGGu--GUCG- -5'
9121 3' -53.9 NC_002512.2 + 213007 0.71 0.860959
Target:  5'- cCGucGGGCCcGggGCCCUCUCGaGGUg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 44373 0.71 0.860959
Target:  5'- uCGAAGAGCg-GcAGGCCC-CCgCGCAGCc -3'
miRNA:   3'- -GCUUCUUGgaC-UUCGGGaGG-GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 116239 0.71 0.868396
Target:  5'- cCGGAGAACCacGAGGCCaC-CCUGCAGg -3'
miRNA:   3'- -GCUUCUUGGa-CUUCGG-GaGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 29562 0.71 0.875625
Target:  5'- gGAGGAcGCCggcggGAAGCCgCUCCCcgAgGGCg -3'
miRNA:   3'- gCUUCU-UGGa----CUUCGG-GAGGG--UgUCG- -5'
9121 3' -53.9 NC_002512.2 + 94665 0.7 0.889442
Target:  5'- gCGGcccGGGGCCggGggGCCCcccggCCCGCuGGCg -3'
miRNA:   3'- -GCU---UCUUGGa-CuuCGGGa----GGGUG-UCG- -5'
9121 3' -53.9 NC_002512.2 + 72257 0.7 0.889442
Target:  5'- cCGcAGGugCagGAAGCCCUUCUuCAGCg -3'
miRNA:   3'- -GCuUCUugGa-CUUCGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 45479 0.7 0.889442
Target:  5'- aCGGAGAagGCC-GAGcGCCCcCCgGCGGCg -3'
miRNA:   3'- -GCUUCU--UGGaCUU-CGGGaGGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 146468 0.7 0.896021
Target:  5'- cCGGAGAACCUcacccaccacGGAaaCC-CCCACGGCg -3'
miRNA:   3'- -GCUUCUUGGA----------CUUcgGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 200220 0.7 0.896021
Target:  5'- cCGAGGAGCC-GGAGCCCgaggagCCCgACGa- -3'
miRNA:   3'- -GCUUCUUGGaCUUCGGGa-----GGG-UGUcg -5'
9121 3' -53.9 NC_002512.2 + 116599 0.7 0.902376
Target:  5'- -cGAGGGCggGAGGCCCg-CCGCGGCu -3'
miRNA:   3'- gcUUCUUGgaCUUCGGGagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 50740 0.7 0.902376
Target:  5'- uCGAGGAGCUgcuGGGCCuCUCCgGCgAGCu -3'
miRNA:   3'- -GCUUCUUGGac-UUCGG-GAGGgUG-UCG- -5'
9121 3' -53.9 NC_002512.2 + 112976 0.7 0.902376
Target:  5'- cCGggGAcGCCguccgaGGAGCCCgCCC-CGGCc -3'
miRNA:   3'- -GCuuCU-UGGa-----CUUCGGGaGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 145715 0.7 0.908503
Target:  5'- cCGccGAACCUGGaccgGGaCCUCCCGC-GCg -3'
miRNA:   3'- -GCuuCUUGGACU----UCgGGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 2452 0.7 0.908503
Target:  5'- gCGAAGGugACCgc-GGCCCgcgCCCGCGcGCg -3'
miRNA:   3'- -GCUUCU--UGGacuUCGGGa--GGGUGU-CG- -5'
9121 3' -53.9 NC_002512.2 + 33080 0.7 0.908503
Target:  5'- aGAAGGACUgGAGGCUgUCgCC-CAGCu -3'
miRNA:   3'- gCUUCUUGGaCUUCGGgAG-GGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 22223 0.7 0.908503
Target:  5'- gGGAGAGCCcgGGAcGCCa--CCACGGCc -3'
miRNA:   3'- gCUUCUUGGa-CUU-CGGgagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 116877 0.69 0.9144
Target:  5'- uCGcuGAACCUGAAGCaCCUgCUGCugaAGCu -3'
miRNA:   3'- -GCuuCUUGGACUUCG-GGAgGGUG---UCG- -5'
9121 3' -53.9 NC_002512.2 + 95957 0.69 0.9144
Target:  5'- gCGggGGG-CUGAGGCCCggguuggCGCAGCg -3'
miRNA:   3'- -GCuuCUUgGACUUCGGGagg----GUGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.