Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9121 | 3' | -53.9 | NC_002512.2 | + | 19163 | 0.71 | 0.857928 |
Target: 5'- uCGAAGGGCUcgucgacgcugagGAAGCgggugaUCUCCCGCGGCg -3' miRNA: 3'- -GCUUCUUGGa------------CUUCG------GGAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 18027 | 0.71 | 0.860959 |
Target: 5'- cCGAcGAugCUGAGGUCCUUCUccuCGGCc -3' miRNA: 3'- -GCUuCUugGACUUCGGGAGGGu--GUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 213007 | 0.71 | 0.860959 |
Target: 5'- cCGucGGGCCcGggGCCCUCUCGaGGUg -3' miRNA: 3'- -GCuuCUUGGaCuuCGGGAGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 44373 | 0.71 | 0.860959 |
Target: 5'- uCGAAGAGCg-GcAGGCCC-CCgCGCAGCc -3' miRNA: 3'- -GCUUCUUGgaC-UUCGGGaGG-GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 116239 | 0.71 | 0.868396 |
Target: 5'- cCGGAGAACCacGAGGCCaC-CCUGCAGg -3' miRNA: 3'- -GCUUCUUGGa-CUUCGG-GaGGGUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 29562 | 0.71 | 0.875625 |
Target: 5'- gGAGGAcGCCggcggGAAGCCgCUCCCcgAgGGCg -3' miRNA: 3'- gCUUCU-UGGa----CUUCGG-GAGGG--UgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 94665 | 0.7 | 0.889442 |
Target: 5'- gCGGcccGGGGCCggGggGCCCcccggCCCGCuGGCg -3' miRNA: 3'- -GCU---UCUUGGa-CuuCGGGa----GGGUG-UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 72257 | 0.7 | 0.889442 |
Target: 5'- cCGcAGGugCagGAAGCCCUUCUuCAGCg -3' miRNA: 3'- -GCuUCUugGa-CUUCGGGAGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 45479 | 0.7 | 0.889442 |
Target: 5'- aCGGAGAagGCC-GAGcGCCCcCCgGCGGCg -3' miRNA: 3'- -GCUUCU--UGGaCUU-CGGGaGGgUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 146468 | 0.7 | 0.896021 |
Target: 5'- cCGGAGAACCUcacccaccacGGAaaCC-CCCACGGCg -3' miRNA: 3'- -GCUUCUUGGA----------CUUcgGGaGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 200220 | 0.7 | 0.896021 |
Target: 5'- cCGAGGAGCC-GGAGCCCgaggagCCCgACGa- -3' miRNA: 3'- -GCUUCUUGGaCUUCGGGa-----GGG-UGUcg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 116599 | 0.7 | 0.902376 |
Target: 5'- -cGAGGGCggGAGGCCCg-CCGCGGCu -3' miRNA: 3'- gcUUCUUGgaCUUCGGGagGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 50740 | 0.7 | 0.902376 |
Target: 5'- uCGAGGAGCUgcuGGGCCuCUCCgGCgAGCu -3' miRNA: 3'- -GCUUCUUGGac-UUCGG-GAGGgUG-UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 112976 | 0.7 | 0.902376 |
Target: 5'- cCGggGAcGCCguccgaGGAGCCCgCCC-CGGCc -3' miRNA: 3'- -GCuuCU-UGGa-----CUUCGGGaGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 145715 | 0.7 | 0.908503 |
Target: 5'- cCGccGAACCUGGaccgGGaCCUCCCGC-GCg -3' miRNA: 3'- -GCuuCUUGGACU----UCgGGAGGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 2452 | 0.7 | 0.908503 |
Target: 5'- gCGAAGGugACCgc-GGCCCgcgCCCGCGcGCg -3' miRNA: 3'- -GCUUCU--UGGacuUCGGGa--GGGUGU-CG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 33080 | 0.7 | 0.908503 |
Target: 5'- aGAAGGACUgGAGGCUgUCgCC-CAGCu -3' miRNA: 3'- gCUUCUUGGaCUUCGGgAG-GGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 22223 | 0.7 | 0.908503 |
Target: 5'- gGGAGAGCCcgGGAcGCCa--CCACGGCc -3' miRNA: 3'- gCUUCUUGGa-CUU-CGGgagGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 116877 | 0.69 | 0.9144 |
Target: 5'- uCGcuGAACCUGAAGCaCCUgCUGCugaAGCu -3' miRNA: 3'- -GCuuCUUGGACUUCG-GGAgGGUG---UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 95957 | 0.69 | 0.9144 |
Target: 5'- gCGggGGG-CUGAGGCCCggguuggCGCAGCg -3' miRNA: 3'- -GCuuCUUgGACUUCGGGagg----GUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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