miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 220312 0.66 0.982242
Target:  5'- cCGggGGGCCgGggGCCgggCUCCgGgGGg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGG---GAGGgUgUCg -5'
9121 3' -53.9 NC_002512.2 + 213856 0.66 0.982242
Target:  5'- aGAAGAuCCcGcuGCCCUucCCCACccGGCg -3'
miRNA:   3'- gCUUCUuGGaCuuCGGGA--GGGUG--UCG- -5'
9121 3' -53.9 NC_002512.2 + 168122 0.66 0.982242
Target:  5'- aGGAGA----GggGCCCggCCGCGGCg -3'
miRNA:   3'- gCUUCUuggaCuuCGGGagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 7069 0.66 0.982044
Target:  5'- gGAAGucgcAGCCgu-GGCUCUCCCAguuccucCAGCg -3'
miRNA:   3'- gCUUC----UUGGacuUCGGGAGGGU-------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 15600 0.66 0.982044
Target:  5'- aCGAAGG---UGAAGCCCUCgggccaggccaggCgACAGCg -3'
miRNA:   3'- -GCUUCUuggACUUCGGGAG-------------GgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 101664 0.66 0.981032
Target:  5'- gGggGGcACCUGGAGacagucguccccgucCCCggUCCCGcCGGCg -3'
miRNA:   3'- gCuuCU-UGGACUUC---------------GGG--AGGGU-GUCG- -5'
9121 3' -53.9 NC_002512.2 + 158775 0.66 0.980191
Target:  5'- aGAAGAuCCUGgcGCUgguggCCCGgGGCg -3'
miRNA:   3'- gCUUCUuGGACuuCGGga---GGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 117877 0.66 0.980191
Target:  5'- cCGcAAGAcggacGCCgGggGCCCgucgcugCuCCACGGCc -3'
miRNA:   3'- -GC-UUCU-----UGGaCuuCGGGa------G-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 63710 0.66 0.980191
Target:  5'- aCGggGAucuccuuguAgCUGAGGUCCUCCUu--GCg -3'
miRNA:   3'- -GCuuCU---------UgGACUUCGGGAGGGuguCG- -5'
9121 3' -53.9 NC_002512.2 + 18492 0.66 0.980191
Target:  5'- uCGAAGAAgCgGuuGCgCCUCuucuuCCGCAGCa -3'
miRNA:   3'- -GCUUCUUgGaCuuCG-GGAG-----GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 62644 0.66 0.980191
Target:  5'- uGAccAGGACCUcucGCCCgaUCCCGCGGa -3'
miRNA:   3'- gCU--UCUUGGAcuuCGGG--AGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 37859 0.66 0.980191
Target:  5'- aGAAGGACC----GCCgCUCCCGC-GCc -3'
miRNA:   3'- gCUUCUUGGacuuCGG-GAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 136782 0.66 0.97797
Target:  5'- aCGAAGAACaggcaGAAGCCCaggaacgaCgCGCGGCu -3'
miRNA:   3'- -GCUUCUUGga---CUUCGGGa-------GgGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 56585 0.66 0.97797
Target:  5'- gCGuuGGAGCCgaUGAcGGCCCUCCaGCGGa -3'
miRNA:   3'- -GCu-UCUUGG--ACU-UCGGGAGGgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 94939 0.66 0.97797
Target:  5'- aCGgcGAGCC-GGAGCCCccggaggaagaUCCgACAGa -3'
miRNA:   3'- -GCuuCUUGGaCUUCGGG-----------AGGgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 119566 0.66 0.97797
Target:  5'- gGgcGGACCgcgGGAGCCCggcgggUCCCcucgcgcCAGCa -3'
miRNA:   3'- gCuuCUUGGa--CUUCGGG------AGGGu------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 195866 0.66 0.97797
Target:  5'- uCGcGGAACCUGAGGaCCUCCgucguCAGg -3'
miRNA:   3'- -GCuUCUUGGACUUCgGGAGGgu---GUCg -5'
9121 3' -53.9 NC_002512.2 + 190917 0.67 0.976793
Target:  5'- aGAGGGACCUGAcgaggcagcggaaccAGaCCCgggcgcacgcgggcgCCCGCcGCg -3'
miRNA:   3'- gCUUCUUGGACU---------------UC-GGGa--------------GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 16880 0.67 0.97557
Target:  5'- uCGAgAGGGCCccGGGCCCgacggCCGCGGCg -3'
miRNA:   3'- -GCU-UCUUGGacUUCGGGag---GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 5051 0.67 0.97557
Target:  5'- uGGAGGuauacGCgUccAGCCCgCCCGCGGCg -3'
miRNA:   3'- gCUUCU-----UGgAcuUCGGGaGGGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.