miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 54735 0.66 0.985858
Target:  5'- ---cGGACCUGAAGgCCUUCUGCGu- -3'
miRNA:   3'- gcuuCUUGGACUUCgGGAGGGUGUcg -5'
9121 3' -53.9 NC_002512.2 + 48433 0.66 0.985858
Target:  5'- uCGAccGGAuCCUGAcgaagacgacGGUgaUCCCGCAGCu -3'
miRNA:   3'- -GCU--UCUuGGACU----------UCGggAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 226227 0.66 0.985858
Target:  5'- cCGggGAGCCgGAGcgaucuuaucGCCa--CCGCGGCc -3'
miRNA:   3'- -GCuuCUUGGaCUU----------CGGgagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 85740 0.66 0.985858
Target:  5'- -cGAGAACCUcGggGUCU--CCGCGGCc -3'
miRNA:   3'- gcUUCUUGGA-CuuCGGGagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 43947 0.66 0.985858
Target:  5'- uCGuAGGccguCCUGAAGCCCUUCUcgucgaccCGGCa -3'
miRNA:   3'- -GCuUCUu---GGACUUCGGGAGGGu-------GUCG- -5'
9121 3' -53.9 NC_002512.2 + 13463 0.66 0.985858
Target:  5'- gCGgcGAGCCUGgcGUCCccggaCCUGCuGCg -3'
miRNA:   3'- -GCuuCUUGGACuuCGGGa----GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 39443 0.66 0.985692
Target:  5'- uGGAGGucacguCCcggucggUGAcGGCCCgcUCCCGCAGCc -3'
miRNA:   3'- gCUUCUu-----GG-------ACU-UCGGG--AGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 71170 0.66 0.985355
Target:  5'- aCGAAGAaggacacgucguccACCUcGGGCaCCUCCCcguccCGGCc -3'
miRNA:   3'- -GCUUCU--------------UGGAcUUCG-GGAGGGu----GUCG- -5'
9121 3' -53.9 NC_002512.2 + 134308 0.66 0.984128
Target:  5'- uCGAGGAcgucGCC-GggGCCggcgccgacggaCUCgCCGCGGCc -3'
miRNA:   3'- -GCUUCU----UGGaCuuCGG------------GAG-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 116819 0.66 0.984128
Target:  5'- uCGucGAccGCCU--GGCCCUCgUGCGGCu -3'
miRNA:   3'- -GCuuCU--UGGAcuUCGGGAGgGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 110944 0.66 0.984128
Target:  5'- uGGAGAACaCcGggGCCagcgCCguCAGCa -3'
miRNA:   3'- gCUUCUUG-GaCuuCGGga--GGguGUCG- -5'
9121 3' -53.9 NC_002512.2 + 197843 0.66 0.984128
Target:  5'- uCGAGGGGCggcggGAGGCCCUCUucaaccgacugCGgGGCa -3'
miRNA:   3'- -GCUUCUUGga---CUUCGGGAGG-----------GUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 106213 0.66 0.984128
Target:  5'- gCGAcGGACCgcuuccccGAGCCCggcCgCCGCGGCg -3'
miRNA:   3'- -GCUuCUUGGac------UUCGGGa--G-GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 184994 0.66 0.984128
Target:  5'- aCGuGGAGCgCUGcGGCCCggugCCgcugUACAGCg -3'
miRNA:   3'- -GCuUCUUG-GACuUCGGGa---GG----GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 219364 0.66 0.984128
Target:  5'- gCGAGGu-CCUGc-GCCucugCUCCCugGGCu -3'
miRNA:   3'- -GCUUCuuGGACuuCGG----GAGGGugUCG- -5'
9121 3' -53.9 NC_002512.2 + 95128 0.66 0.984128
Target:  5'- cCGAcGAACCgGAcGGUCCgCCC-CGGCg -3'
miRNA:   3'- -GCUuCUUGGaCU-UCGGGaGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 14226 0.66 0.983763
Target:  5'- gGAAGcgguagcacuuCUUGAcGGCCCgcagcCCCACGGCg -3'
miRNA:   3'- gCUUCuu---------GGACU-UCGGGa----GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 224529 0.66 0.983205
Target:  5'- cCGGAGGACCacaggucccgggGAccauGGCCUUCCCcaucgauccccaccGCGGCu -3'
miRNA:   3'- -GCUUCUUGGa-----------CU----UCGGGAGGG--------------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 29713 0.66 0.982242
Target:  5'- gGAGGAGCCcaugaccgUGucGCCCUaCCgugGCGGCg -3'
miRNA:   3'- gCUUCUUGG--------ACuuCGGGAgGG---UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 140201 0.66 0.982242
Target:  5'- uCGAGuucGGCCUGccGCUCUCCCcgaGGCa -3'
miRNA:   3'- -GCUUc--UUGGACuuCGGGAGGGug-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.