Results 61 - 80 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9121 | 3' | -53.9 | NC_002512.2 | + | 229882 | 0.67 | 0.97557 |
Target: 5'- aGGAGGACC---GGCCCUCaCgACGGg -3' miRNA: 3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 479 | 0.67 | 0.97557 |
Target: 5'- aGGAGGACC---GGCCCUCaCgACGGg -3' miRNA: 3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 5051 | 0.67 | 0.97557 |
Target: 5'- uGGAGGuauacGCgUccAGCCCgCCCGCGGCg -3' miRNA: 3'- gCUUCU-----UGgAcuUCGGGaGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 2701 | 0.67 | 0.97557 |
Target: 5'- gGGAGcGCCUGccGCUC-CCC-CGGCu -3' miRNA: 3'- gCUUCuUGGACuuCGGGaGGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 16880 | 0.67 | 0.97557 |
Target: 5'- uCGAgAGGGCCccGGGCCCgacggCCGCGGCg -3' miRNA: 3'- -GCU-UCUUGGacUUCGGGag---GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 213047 | 0.67 | 0.972984 |
Target: 5'- gCGggGGAUCgaGAucGCCCUgCC-CAGCc -3' miRNA: 3'- -GCuuCUUGGa-CUu-CGGGAgGGuGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 168720 | 0.67 | 0.972984 |
Target: 5'- uCGggGAGCUcGu-GCCCUCCUugcaGGCc -3' miRNA: 3'- -GCuuCUUGGaCuuCGGGAGGGug--UCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 136068 | 0.67 | 0.972984 |
Target: 5'- -cGAGAACCUGGguggcGGCgUUCCUGCuGCu -3' miRNA: 3'- gcUUCUUGGACU-----UCGgGAGGGUGuCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 74763 | 0.67 | 0.972984 |
Target: 5'- cCGGAcGACCcaGGAGCUCUUCCAgGGUg -3' miRNA: 3'- -GCUUcUUGGa-CUUCGGGAGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 35251 | 0.67 | 0.972984 |
Target: 5'- aGAAGAggACggGcAGGUCC-CCCGCGGCg -3' miRNA: 3'- gCUUCU--UGgaC-UUCGGGaGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 99909 | 0.67 | 0.972984 |
Target: 5'- uCGAGGGcGCCgGggGCCCgCCgaaggGCGGCg -3' miRNA: 3'- -GCUUCU-UGGaCuuCGGGaGGg----UGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 133488 | 0.67 | 0.972984 |
Target: 5'- -cGAGAACCacucGGCCCUgCUGCAGUa -3' miRNA: 3'- gcUUCUUGGacu-UCGGGAgGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 95488 | 0.67 | 0.971341 |
Target: 5'- cCGuAGGAGCCUcGAGGCCaggagagacaggaCCCGCAGg -3' miRNA: 3'- -GC-UUCUUGGA-CUUCGGga-----------GGGUGUCg -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 103499 | 0.67 | 0.970206 |
Target: 5'- cCGggGccCCgGgcGCUCUCCCggGCGGCc -3' miRNA: 3'- -GCuuCuuGGaCuuCGGGAGGG--UGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 82410 | 0.67 | 0.970206 |
Target: 5'- gGggGAGCC---GGUggUCCCGCGGCg -3' miRNA: 3'- gCuuCUUGGacuUCGggAGGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 213663 | 0.67 | 0.970206 |
Target: 5'- aCGAugacGGAGgCggaggGGAGCCCggcgucgCCCGCGGUc -3' miRNA: 3'- -GCU----UCUUgGa----CUUCGGGa------GGGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 156114 | 0.67 | 0.970206 |
Target: 5'- uGAAGGccaAgCUGgcGCCCUUcaagcgcuaCCACGGCu -3' miRNA: 3'- gCUUCU---UgGACuuCGGGAG---------GGUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 158152 | 0.67 | 0.970206 |
Target: 5'- gCGAcu-ACCUGAgcaccauccaGGCCCUCgggaCGCGGCu -3' miRNA: 3'- -GCUucuUGGACU----------UCGGGAGg---GUGUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 43059 | 0.67 | 0.970206 |
Target: 5'- gCGcAGGGCCUcgccGAGGCaCCggUCCCGgGGCg -3' miRNA: 3'- -GCuUCUUGGA----CUUCG-GG--AGGGUgUCG- -5' |
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9121 | 3' | -53.9 | NC_002512.2 | + | 191710 | 0.67 | 0.969917 |
Target: 5'- aGAAGuAUCUGAAGCCCaucaugaCCCgaaggaaaaccgaACGGCu -3' miRNA: 3'- gCUUCuUGGACUUCGGGa------GGG-------------UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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