miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 229882 0.67 0.97557
Target:  5'- aGGAGGACC---GGCCCUCaCgACGGg -3'
miRNA:   3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 479 0.67 0.97557
Target:  5'- aGGAGGACC---GGCCCUCaCgACGGg -3'
miRNA:   3'- gCUUCUUGGacuUCGGGAG-GgUGUCg -5'
9121 3' -53.9 NC_002512.2 + 5051 0.67 0.97557
Target:  5'- uGGAGGuauacGCgUccAGCCCgCCCGCGGCg -3'
miRNA:   3'- gCUUCU-----UGgAcuUCGGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 2701 0.67 0.97557
Target:  5'- gGGAGcGCCUGccGCUC-CCC-CGGCu -3'
miRNA:   3'- gCUUCuUGGACuuCGGGaGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 16880 0.67 0.97557
Target:  5'- uCGAgAGGGCCccGGGCCCgacggCCGCGGCg -3'
miRNA:   3'- -GCU-UCUUGGacUUCGGGag---GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 213047 0.67 0.972984
Target:  5'- gCGggGGAUCgaGAucGCCCUgCC-CAGCc -3'
miRNA:   3'- -GCuuCUUGGa-CUu-CGGGAgGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 168720 0.67 0.972984
Target:  5'- uCGggGAGCUcGu-GCCCUCCUugcaGGCc -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGAGGGug--UCG- -5'
9121 3' -53.9 NC_002512.2 + 136068 0.67 0.972984
Target:  5'- -cGAGAACCUGGguggcGGCgUUCCUGCuGCu -3'
miRNA:   3'- gcUUCUUGGACU-----UCGgGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 74763 0.67 0.972984
Target:  5'- cCGGAcGACCcaGGAGCUCUUCCAgGGUg -3'
miRNA:   3'- -GCUUcUUGGa-CUUCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 35251 0.67 0.972984
Target:  5'- aGAAGAggACggGcAGGUCC-CCCGCGGCg -3'
miRNA:   3'- gCUUCU--UGgaC-UUCGGGaGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 99909 0.67 0.972984
Target:  5'- uCGAGGGcGCCgGggGCCCgCCgaaggGCGGCg -3'
miRNA:   3'- -GCUUCU-UGGaCuuCGGGaGGg----UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 133488 0.67 0.972984
Target:  5'- -cGAGAACCacucGGCCCUgCUGCAGUa -3'
miRNA:   3'- gcUUCUUGGacu-UCGGGAgGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 95488 0.67 0.971341
Target:  5'- cCGuAGGAGCCUcGAGGCCaggagagacaggaCCCGCAGg -3'
miRNA:   3'- -GC-UUCUUGGA-CUUCGGga-----------GGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 103499 0.67 0.970206
Target:  5'- cCGggGccCCgGgcGCUCUCCCggGCGGCc -3'
miRNA:   3'- -GCuuCuuGGaCuuCGGGAGGG--UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 82410 0.67 0.970206
Target:  5'- gGggGAGCC---GGUggUCCCGCGGCg -3'
miRNA:   3'- gCuuCUUGGacuUCGggAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 213663 0.67 0.970206
Target:  5'- aCGAugacGGAGgCggaggGGAGCCCggcgucgCCCGCGGUc -3'
miRNA:   3'- -GCU----UCUUgGa----CUUCGGGa------GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 156114 0.67 0.970206
Target:  5'- uGAAGGccaAgCUGgcGCCCUUcaagcgcuaCCACGGCu -3'
miRNA:   3'- gCUUCU---UgGACuuCGGGAG---------GGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 158152 0.67 0.970206
Target:  5'- gCGAcu-ACCUGAgcaccauccaGGCCCUCgggaCGCGGCu -3'
miRNA:   3'- -GCUucuUGGACU----------UCGGGAGg---GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 43059 0.67 0.970206
Target:  5'- gCGcAGGGCCUcgccGAGGCaCCggUCCCGgGGCg -3'
miRNA:   3'- -GCuUCUUGGA----CUUCG-GG--AGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 191710 0.67 0.969917
Target:  5'- aGAAGuAUCUGAAGCCCaucaugaCCCgaaggaaaaccgaACGGCu -3'
miRNA:   3'- gCUUCuUGGACUUCGGGa------GGG-------------UGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.