miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 5' -55.9 NC_002512.2 + 106845 1.08 0.005148
Target:  5'- cAGGGUGCAGUCGAUCUCGACGACCUCc -3'
miRNA:   3'- -UCCCACGUCAGCUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 140053 0.8 0.308931
Target:  5'- cGGGccGUGCAGcgCGGUCUCGACGuCCUCu -3'
miRNA:   3'- -UCC--CACGUCa-GCUAGAGCUGCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 40415 0.76 0.525837
Target:  5'- cAGGGUGUAGcCGAUCUCGcgcGCGACg-- -3'
miRNA:   3'- -UCCCACGUCaGCUAGAGC---UGCUGgag -5'
9121 5' -55.9 NC_002512.2 + 122597 0.74 0.623865
Target:  5'- cGGGGaGaucaGGUUcGUCUCGGCGGCCUCg -3'
miRNA:   3'- -UCCCaCg---UCAGcUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 89647 0.73 0.673494
Target:  5'- cGGGGcggacgaaGCGGUCGAcguaCUCGACGuGCCUCg -3'
miRNA:   3'- -UCCCa-------CGUCAGCUa---GAGCUGC-UGGAG- -5'
9121 5' -55.9 NC_002512.2 + 18804 0.73 0.673494
Target:  5'- cGGaUGCGGUCGuucagCUCGACGAgCUCc -3'
miRNA:   3'- uCCcACGUCAGCua---GAGCUGCUgGAG- -5'
9121 5' -55.9 NC_002512.2 + 129120 0.73 0.683356
Target:  5'- cGGGUGCAGcgcucCGAgcaccagCUCGGCGugUUCg -3'
miRNA:   3'- uCCCACGUCa----GCUa------GAGCUGCugGAG- -5'
9121 5' -55.9 NC_002512.2 + 107084 0.72 0.693178
Target:  5'- cGGGG-GCGGUCgGGUCggUCGGCGGCC-Cg -3'
miRNA:   3'- -UCCCaCGUCAG-CUAG--AGCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 7209 0.72 0.702951
Target:  5'- cGGGcGCAGUCGAaCUCGAgGcgccCCUCg -3'
miRNA:   3'- uCCCaCGUCAGCUaGAGCUgCu---GGAG- -5'
9121 5' -55.9 NC_002512.2 + 209344 0.72 0.712668
Target:  5'- uGGaGGUGUGGUaCGAggUCGGCGACCUg -3'
miRNA:   3'- -UC-CCACGUCA-GCUagAGCUGCUGGAg -5'
9121 5' -55.9 NC_002512.2 + 150519 0.72 0.741398
Target:  5'- cGGGGUGCAGUUccacgCGGCGGCCg- -3'
miRNA:   3'- -UCCCACGUCAGcuagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 219061 0.7 0.804889
Target:  5'- cGGGGcuccccGCGGgcuUCGAgCUCGACGugCUCa -3'
miRNA:   3'- -UCCCa-----CGUC---AGCUaGAGCUGCugGAG- -5'
9121 5' -55.9 NC_002512.2 + 106519 0.7 0.830047
Target:  5'- cGGGUGCAGUCuGAUCaucagcUCGAacgcguaguCGuCCUCg -3'
miRNA:   3'- uCCCACGUCAG-CUAG------AGCU---------GCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 153070 0.7 0.838102
Target:  5'- cGGGUcgGCGGUCGAgg-CGGCGAUCg- -3'
miRNA:   3'- uCCCA--CGUCAGCUagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 32011 0.7 0.841275
Target:  5'- cGGGUcccgucacuugccccGCAGUCGGUUgaaGAgGGCCUCc -3'
miRNA:   3'- uCCCA---------------CGUCAGCUAGag-CUgCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 201781 0.69 0.845981
Target:  5'- gAGGGUgagagcGCGGaCGGgg-CGGCGACCUCu -3'
miRNA:   3'- -UCCCA------CGUCaGCUagaGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 57123 0.69 0.860441
Target:  5'- gGGGGUGC-GcCGAcaguaccUCUCGACGAagaCCUUg -3'
miRNA:   3'- -UCCCACGuCaGCU-------AGAGCUGCU---GGAG- -5'
9121 5' -55.9 NC_002512.2 + 46665 0.69 0.861183
Target:  5'- aGGGGUccucGgGGUCGAUCcCGuCGAUCUCc -3'
miRNA:   3'- -UCCCA----CgUCAGCUAGaGCuGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 105844 0.69 0.868494
Target:  5'- gAGGGUGCcGUCGAUCagGGCGuACa-- -3'
miRNA:   3'- -UCCCACGuCAGCUAGagCUGC-UGgag -5'
9121 5' -55.9 NC_002512.2 + 58248 0.69 0.878391
Target:  5'- cAGGGUccgauacucguccucGCuGUCGggCccgaaggCGACGACCUCg -3'
miRNA:   3'- -UCCCA---------------CGuCAGCuaGa------GCUGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.