miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 5' -55.9 NC_002512.2 + 19356 0.66 0.959728
Target:  5'- ---aUGCcggaccGUCGGgggCUCGGCGGCCUCg -3'
miRNA:   3'- ucccACGu-----CAGCUa--GAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 44526 0.67 0.929936
Target:  5'- aAGGuGUcGCAGUCGAcggCgauggCGGCGGCCa- -3'
miRNA:   3'- -UCC-CA-CGUCAGCUa--Ga----GCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 68903 0.67 0.934858
Target:  5'- cGGG-GCGGUCGugcugCUgGccgccGCGGCCUCg -3'
miRNA:   3'- uCCCaCGUCAGCua---GAgC-----UGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 23105 0.67 0.939555
Target:  5'- cGGcGUGCGGaugaUCGcgCUgGACGACCcCa -3'
miRNA:   3'- uCC-CACGUC----AGCuaGAgCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 86611 0.66 0.948279
Target:  5'- gGGGGaGCGGUCGGUucCUCGu---CCUCg -3'
miRNA:   3'- -UCCCaCGUCAGCUA--GAGCugcuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 72955 0.66 0.948279
Target:  5'- cAGGGUgGCGaccGUgGGcuccuUCUUGACGGCCUUg -3'
miRNA:   3'- -UCCCA-CGU---CAgCU-----AGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 106635 0.66 0.952311
Target:  5'- gGGGGUaGCGG-CGccggCUCGGCGAguaguCCUCc -3'
miRNA:   3'- -UCCCA-CGUCaGCua--GAGCUGCU-----GGAG- -5'
9121 5' -55.9 NC_002512.2 + 9994 0.66 0.952311
Target:  5'- gAGGaGgGCGGUCGGcucgUCUcCGAcccCGGCCUCg -3'
miRNA:   3'- -UCC-CaCGUCAGCU----AGA-GCU---GCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 16832 0.66 0.958669
Target:  5'- cGGGGcuggGCAGggCGAUCUCGaucccccgcagccgGCGgacgcACCUCg -3'
miRNA:   3'- -UCCCa---CGUCa-GCUAGAGC--------------UGC-----UGGAG- -5'
9121 5' -55.9 NC_002512.2 + 153746 0.67 0.919416
Target:  5'- gGGGGgGUGGUCGaAUCg-GACGACgUCa -3'
miRNA:   3'- -UCCCaCGUCAGC-UAGagCUGCUGgAG- -5'
9121 5' -55.9 NC_002512.2 + 28594 0.68 0.895686
Target:  5'- gAGcGGUGCGcGUC-AUCUCGGUGGCCUUc -3'
miRNA:   3'- -UC-CCACGU-CAGcUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 58248 0.69 0.878391
Target:  5'- cAGGGUccgauacucguccucGCuGUCGggCccgaaggCGACGACCUCg -3'
miRNA:   3'- -UCCCA---------------CGuCAGCuaGa------GCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 40415 0.76 0.525837
Target:  5'- cAGGGUGUAGcCGAUCUCGcgcGCGACg-- -3'
miRNA:   3'- -UCCCACGUCaGCUAGAGC---UGCUGgag -5'
9121 5' -55.9 NC_002512.2 + 18804 0.73 0.673494
Target:  5'- cGGaUGCGGUCGuucagCUCGACGAgCUCc -3'
miRNA:   3'- uCCcACGUCAGCua---GAGCUGCUgGAG- -5'
9121 5' -55.9 NC_002512.2 + 107084 0.72 0.693178
Target:  5'- cGGGG-GCGGUCgGGUCggUCGGCGGCC-Cg -3'
miRNA:   3'- -UCCCaCGUCAG-CUAG--AGCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 7209 0.72 0.702951
Target:  5'- cGGGcGCAGUCGAaCUCGAgGcgccCCUCg -3'
miRNA:   3'- uCCCaCGUCAGCUaGAGCUgCu---GGAG- -5'
9121 5' -55.9 NC_002512.2 + 106519 0.7 0.830047
Target:  5'- cGGGUGCAGUCuGAUCaucagcUCGAacgcguaguCGuCCUCg -3'
miRNA:   3'- uCCCACGUCAG-CUAG------AGCU---------GCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 32011 0.7 0.841275
Target:  5'- cGGGUcccgucacuugccccGCAGUCGGUUgaaGAgGGCCUCc -3'
miRNA:   3'- uCCCA---------------CGUCAGCUAGag-CUgCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 57123 0.69 0.860441
Target:  5'- gGGGGUGC-GcCGAcaguaccUCUCGACGAagaCCUUg -3'
miRNA:   3'- -UCCCACGuCaGCU-------AGAGCUGCU---GGAG- -5'
9121 5' -55.9 NC_002512.2 + 46665 0.69 0.861183
Target:  5'- aGGGGUccucGgGGUCGAUCcCGuCGAUCUCc -3'
miRNA:   3'- -UCCCA----CgUCAGCUAGaGCuGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.