Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9121 | 5' | -55.9 | NC_002512.2 | + | 57123 | 0.69 | 0.860441 |
Target: 5'- gGGGGUGC-GcCGAcaguaccUCUCGACGAagaCCUUg -3' miRNA: 3'- -UCCCACGuCaGCU-------AGAGCUGCU---GGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 46665 | 0.69 | 0.861183 |
Target: 5'- aGGGGUccucGgGGUCGAUCcCGuCGAUCUCc -3' miRNA: 3'- -UCCCA----CgUCAGCUAGaGCuGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 58248 | 0.69 | 0.878391 |
Target: 5'- cAGGGUccgauacucguccucGCuGUCGggCccgaaggCGACGACCUCg -3' miRNA: 3'- -UCCCA---------------CGuCAGCuaGa------GCUGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 106845 | 1.08 | 0.005148 |
Target: 5'- cAGGGUGCAGUCGAUCUCGACGACCUCc -3' miRNA: 3'- -UCCCACGUCAGCUAGAGCUGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 153070 | 0.7 | 0.838102 |
Target: 5'- cGGGUcgGCGGUCGAgg-CGGCGAUCg- -3' miRNA: 3'- uCCCA--CGUCAGCUagaGCUGCUGGag -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 201781 | 0.69 | 0.845981 |
Target: 5'- gAGGGUgagagcGCGGaCGGgg-CGGCGACCUCu -3' miRNA: 3'- -UCCCA------CGUCaGCUagaGCUGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 105844 | 0.69 | 0.868494 |
Target: 5'- gAGGGUGCcGUCGAUCagGGCGuACa-- -3' miRNA: 3'- -UCCCACGuCAGCUAGagCUGC-UGgag -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 76122 | 0.69 | 0.882509 |
Target: 5'- cGGGGUGguGUCGAUgaCGucguccgauuCGACCa- -3' miRNA: 3'- -UCCCACguCAGCUAgaGCu---------GCUGGag -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 198042 | 0.68 | 0.913817 |
Target: 5'- gAGGGgacGCGGUCGucacagggacGUCUCGcGCGuccCCUCg -3' miRNA: 3'- -UCCCa--CGUCAGC----------UAGAGC-UGCu--GGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 156475 | 0.67 | 0.919416 |
Target: 5'- cGGGG-GCGG-CGggCUCGGCGGgCUg -3' miRNA: 3'- -UCCCaCGUCaGCuaGAGCUGCUgGAg -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 201864 | 0.67 | 0.919416 |
Target: 5'- uGGGGccUGCGGUcCGAggacggCGGCGGCUUCu -3' miRNA: 3'- -UCCC--ACGUCA-GCUaga---GCUGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 116469 | 0.67 | 0.929936 |
Target: 5'- cGGG-GCGGU-GAUCcCGGCGGCC-Ca -3' miRNA: 3'- uCCCaCGUCAgCUAGaGCUGCUGGaG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 103575 | 0.67 | 0.933892 |
Target: 5'- uGGGGagacgacgccucGCAGgccacgagggCGGUgUCGACGGCCUCc -3' miRNA: 3'- -UCCCa-----------CGUCa---------GCUAgAGCUGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 191598 | 0.67 | 0.934858 |
Target: 5'- -cGGUcgcGCGGUCGAgucCUCGGCGuCUUCu -3' miRNA: 3'- ucCCA---CGUCAGCUa--GAGCUGCuGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 221453 | 0.67 | 0.939555 |
Target: 5'- cGGGGcGCGGUCG-UC-CGAcCGGCCg- -3' miRNA: 3'- -UCCCaCGUCAGCuAGaGCU-GCUGGag -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 227712 | 0.67 | 0.939555 |
Target: 5'- gGGGGcGCGGUaCGGUCccCGACu-CCUCg -3' miRNA: 3'- -UCCCaCGUCA-GCUAGa-GCUGcuGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 224356 | 0.66 | 0.948279 |
Target: 5'- cGGGGUcGCGGgcgggagaccUCGGUC-CGG-GACCUCg -3' miRNA: 3'- -UCCCA-CGUC----------AGCUAGaGCUgCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 150682 | 0.66 | 0.957592 |
Target: 5'- cGGGcgcgGCGGUCGccccgacggaccguuGgcUCUCGGCGGCCg- -3' miRNA: 3'- uCCCa---CGUCAGC---------------U--AGAGCUGCUGGag -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 146724 | 0.66 | 0.959728 |
Target: 5'- cGGGGcgGCGGccgcggccgcCGggCcCGACGACCUCg -3' miRNA: 3'- -UCCCa-CGUCa---------GCuaGaGCUGCUGGAG- -5' |
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9121 | 5' | -55.9 | NC_002512.2 | + | 155026 | 0.66 | 0.966309 |
Target: 5'- cGGGUGCGGUUccggagcgGAUCgCGACGGggagggUCUCc -3' miRNA: 3'- uCCCACGUCAG--------CUAGaGCUGCU------GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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