miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 5' -55.9 NC_002512.2 + 106519 0.7 0.830047
Target:  5'- cGGGUGCAGUCuGAUCaucagcUCGAacgcguaguCGuCCUCg -3'
miRNA:   3'- uCCCACGUCAG-CUAG------AGCU---------GCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 106635 0.66 0.952311
Target:  5'- gGGGGUaGCGG-CGccggCUCGGCGAguaguCCUCc -3'
miRNA:   3'- -UCCCA-CGUCaGCua--GAGCUGCU-----GGAG- -5'
9121 5' -55.9 NC_002512.2 + 106845 1.08 0.005148
Target:  5'- cAGGGUGCAGUCGAUCUCGACGACCUCc -3'
miRNA:   3'- -UCCCACGUCAGCUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 107084 0.72 0.693178
Target:  5'- cGGGG-GCGGUCgGGUCggUCGGCGGCC-Cg -3'
miRNA:   3'- -UCCCaCGUCAG-CUAG--AGCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 116469 0.67 0.929936
Target:  5'- cGGG-GCGGU-GAUCcCGGCGGCC-Ca -3'
miRNA:   3'- uCCCaCGUCAgCUAGaGCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 122597 0.74 0.623865
Target:  5'- cGGGGaGaucaGGUUcGUCUCGGCGGCCUCg -3'
miRNA:   3'- -UCCCaCg---UCAGcUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 123234 0.66 0.963121
Target:  5'- --aGUGCGGgcucgacuucuUCGAgCUCGACGACCg- -3'
miRNA:   3'- uccCACGUC-----------AGCUaGAGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 129120 0.73 0.683356
Target:  5'- cGGGUGCAGcgcucCGAgcaccagCUCGGCGugUUCg -3'
miRNA:   3'- uCCCACGUCa----GCUa------GAGCUGCugGAG- -5'
9121 5' -55.9 NC_002512.2 + 136644 0.66 0.959728
Target:  5'- cAGGG-GCAG-CGA-CUCGAUGGCgUa -3'
miRNA:   3'- -UCCCaCGUCaGCUaGAGCUGCUGgAg -5'
9121 5' -55.9 NC_002512.2 + 140053 0.8 0.308931
Target:  5'- cGGGccGUGCAGcgCGGUCUCGACGuCCUCu -3'
miRNA:   3'- -UCC--CACGUCa-GCUAGAGCUGCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 146724 0.66 0.959728
Target:  5'- cGGGGcgGCGGccgcggccgcCGggCcCGACGACCUCg -3'
miRNA:   3'- -UCCCa-CGUCa---------GCuaGaGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 150519 0.72 0.741398
Target:  5'- cGGGGUGCAGUUccacgCGGCGGCCg- -3'
miRNA:   3'- -UCCCACGUCAGcuagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 150682 0.66 0.957592
Target:  5'- cGGGcgcgGCGGUCGccccgacggaccguuGgcUCUCGGCGGCCg- -3'
miRNA:   3'- uCCCa---CGUCAGC---------------U--AGAGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 153070 0.7 0.838102
Target:  5'- cGGGUcgGCGGUCGAgg-CGGCGAUCg- -3'
miRNA:   3'- uCCCA--CGUCAGCUagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 153746 0.67 0.919416
Target:  5'- gGGGGgGUGGUCGaAUCg-GACGACgUCa -3'
miRNA:   3'- -UCCCaCGUCAGC-UAGagCUGCUGgAG- -5'
9121 5' -55.9 NC_002512.2 + 155026 0.66 0.966309
Target:  5'- cGGGUGCGGUUccggagcgGAUCgCGACGGggagggUCUCc -3'
miRNA:   3'- uCCCACGUCAG--------CUAGaGCUGCU------GGAG- -5'
9121 5' -55.9 NC_002512.2 + 156475 0.67 0.919416
Target:  5'- cGGGG-GCGG-CGggCUCGGCGGgCUg -3'
miRNA:   3'- -UCCCaCGUCaGCuaGAGCUGCUgGAg -5'
9121 5' -55.9 NC_002512.2 + 191598 0.67 0.934858
Target:  5'- -cGGUcgcGCGGUCGAgucCUCGGCGuCUUCu -3'
miRNA:   3'- ucCCA---CGUCAGCUa--GAGCUGCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 198042 0.68 0.913817
Target:  5'- gAGGGgacGCGGUCGucacagggacGUCUCGcGCGuccCCUCg -3'
miRNA:   3'- -UCCCa--CGUCAGC----------UAGAGC-UGCu--GGAG- -5'
9121 5' -55.9 NC_002512.2 + 201781 0.69 0.845981
Target:  5'- gAGGGUgagagcGCGGaCGGgg-CGGCGACCUCu -3'
miRNA:   3'- -UCCCA------CGUCaGCUagaGCUGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.