miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 5' -53.6 NC_002512.2 + 98156 0.71 0.916771
Target:  5'- cCCCGGCGGuCGCCGc---GGUCU-GGa -3'
miRNA:   3'- -GGGCUGCCuGCGGCacauCUAGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 98568 0.66 0.991234
Target:  5'- aUCCGGCGGGCGCCucgGgcggcGGGUCg--- -3'
miRNA:   3'- -GGGCUGCCUGCGGca-Ca----UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 99212 0.71 0.916771
Target:  5'- cUCCG-CGGccgcCGCCGUGUGGGUCg--- -3'
miRNA:   3'- -GGGCuGCCu---GCGGCACAUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 99264 0.69 0.954138
Target:  5'- cCCCGA-GGACGCCGgacgcgGGGUCgagcaGGa -3'
miRNA:   3'- -GGGCUgCCUGCGGCaca---UCUAGaa---CC- -5'
9122 5' -53.6 NC_002512.2 + 99978 0.68 0.973247
Target:  5'- cCCCG-CGGugGCUGUGUcuguUCUcGGc -3'
miRNA:   3'- -GGGCuGCCugCGGCACAucu-AGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 101664 0.67 0.982258
Target:  5'- gCCG-CGGACGCCGggccGAUCUa-- -3'
miRNA:   3'- gGGCuGCCUGCGGCacauCUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 104340 0.66 0.991234
Target:  5'- uUCCGucgguCGGGCGgCGgcucgcuugGUGGAUCggUGGg -3'
miRNA:   3'- -GGGCu----GCCUGCgGCa--------CAUCUAGa-ACC- -5'
9122 5' -53.6 NC_002512.2 + 104772 0.66 0.994878
Target:  5'- uCCCGGuCGGACGgCgCGUGgcgGGGUCc--- -3'
miRNA:   3'- -GGGCU-GCCUGC-G-GCACa--UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 105147 1.12 0.006207
Target:  5'- aCCCGACGGACGCCGUGUAGAUCUUGGc -3'
miRNA:   3'- -GGGCUGCCUGCGGCACAUCUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 107394 0.67 0.984102
Target:  5'- gUCCGAC-GACGCUGaGggGGAUCUucUGGa -3'
miRNA:   3'- -GGGCUGcCUGCGGCaCa-UCUAGA--ACC- -5'
9122 5' -53.6 NC_002512.2 + 107631 0.68 0.980048
Target:  5'- cCCCG-CGGcCGCCGgggaagaccgagcUGUAGGucagaccggUCUUGGc -3'
miRNA:   3'- -GGGCuGCCuGCGGC-------------ACAUCU---------AGAACC- -5'
9122 5' -53.6 NC_002512.2 + 109951 0.68 0.980257
Target:  5'- aCCGcguGCGGgggcgACGCCGcGcucgAGAUCUUGGu -3'
miRNA:   3'- gGGC---UGCC-----UGCGGCaCa---UCUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 111110 0.66 0.993251
Target:  5'- gCCCGGCGGcggagGCGCCGcccgcgGGGUcCUUGu -3'
miRNA:   3'- -GGGCUGCC-----UGCGGCaca---UCUA-GAACc -5'
9122 5' -53.6 NC_002512.2 + 111405 0.7 0.936754
Target:  5'- cCCCGGCagcucGGCGCCGUacucgauGUAGAUCUg-- -3'
miRNA:   3'- -GGGCUGc----CUGCGGCA-------CAUCUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 111518 0.67 0.987351
Target:  5'- gCCGGCGGuaGCGCCcUGUcacguagagcgAGAUCUcccgGGa -3'
miRNA:   3'- gGGCUGCC--UGCGGcACA-----------UCUAGAa---CC- -5'
9122 5' -53.6 NC_002512.2 + 118688 0.66 0.993251
Target:  5'- uCCCGACGucGGCGCCGUGgg---CUUc- -3'
miRNA:   3'- -GGGCUGC--CUGCGGCACaucuaGAAcc -5'
9122 5' -53.6 NC_002512.2 + 119106 0.68 0.980257
Target:  5'- aCCUGGUGGGCGUCGUGUaccggcggcgGGAUCa--- -3'
miRNA:   3'- -GGGCUGCCUGCGGCACA----------UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 121345 0.66 0.992193
Target:  5'- gCCCGGCGGAccuucucCGCCGUc-GGGUCcccGGc -3'
miRNA:   3'- -GGGCUGCCU-------GCGGCAcaUCUAGaa-CC- -5'
9122 5' -53.6 NC_002512.2 + 127577 0.66 0.993159
Target:  5'- gCCCGACGGAccguccgcgacguCGCCcUGgcGGUCg--- -3'
miRNA:   3'- -GGGCUGCCU-------------GCGGcACauCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 128677 0.74 0.792948
Target:  5'- aCCCGGCGGACgggGCCGUcGU-GAUCggcaagGGg -3'
miRNA:   3'- -GGGCUGCCUG---CGGCA-CAuCUAGaa----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.