miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 5' -53.6 NC_002512.2 + 4193 0.74 0.810183
Target:  5'- uCCUGA-GGACGCCGg--AGAUCggUGGg -3'
miRNA:   3'- -GGGCUgCCUGCGGCacaUCUAGa-ACC- -5'
9122 5' -53.6 NC_002512.2 + 6439 0.69 0.96459
Target:  5'- gUCUGGCGGGCGCCGagacagGGGUCggccGGc -3'
miRNA:   3'- -GGGCUGCCUGCGGCaca---UCUAGaa--CC- -5'
9122 5' -53.6 NC_002512.2 + 11330 0.66 0.991234
Target:  5'- aCgCGACGGACGCCGgcgGGAg----- -3'
miRNA:   3'- -GgGCUGCCUGCGGCacaUCUagaacc -5'
9122 5' -53.6 NC_002512.2 + 13419 0.7 0.932443
Target:  5'- cCCUGugGGACGCCGgcuaccUGGGcuUCUcgaUGGa -3'
miRNA:   3'- -GGGCugCCUGCGGCac----AUCU--AGA---ACC- -5'
9122 5' -53.6 NC_002512.2 + 17513 0.66 0.994878
Target:  5'- uCUCGACGucGGCGUCGgcGUAGGcggccagcucgcUCUUGGa -3'
miRNA:   3'- -GGGCUGC--CUGCGGCa-CAUCU------------AGAACC- -5'
9122 5' -53.6 NC_002512.2 + 27971 0.66 0.993251
Target:  5'- gCCGAUGGGCGgCCGggcgAGAUUccGGc -3'
miRNA:   3'- gGGCUGCCUGC-GGCaca-UCUAGaaCC- -5'
9122 5' -53.6 NC_002512.2 + 32565 0.66 0.993251
Target:  5'- gCCGcCGGGCGCCGcggGUgccgGGGUCgugucGGa -3'
miRNA:   3'- gGGCuGCCUGCGGCa--CA----UCUAGaa---CC- -5'
9122 5' -53.6 NC_002512.2 + 35139 0.67 0.984102
Target:  5'- uCCCGACuGGCGCCcacgGUGgAGAUCg--- -3'
miRNA:   3'- -GGGCUGcCUGCGG----CACaUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 38934 0.69 0.96459
Target:  5'- gCCgCGGCGGGCGCCcgcGUGcgcccGGGUCU-GGu -3'
miRNA:   3'- -GG-GCUGCCUGCGG---CACa----UCUAGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 45524 0.67 0.985797
Target:  5'- cCCgCGGCGGGCGgCGgcGgcGA-CUUGGg -3'
miRNA:   3'- -GG-GCUGCCUGCgGCa-CauCUaGAACC- -5'
9122 5' -53.6 NC_002512.2 + 50103 0.66 0.991671
Target:  5'- -aCGACGGAccggucgaaggaggcCGCCGUGUAcAUCUg-- -3'
miRNA:   3'- ggGCUGCCU---------------GCGGCACAUcUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 53890 0.68 0.980257
Target:  5'- aCCGACGGACGa-Gg--AGAUCUcGGu -3'
miRNA:   3'- gGGCUGCCUGCggCacaUCUAGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 54500 0.66 0.993251
Target:  5'- gCCUGGuCGGAgGCCGUGaugccGAUCgaaccgGGa -3'
miRNA:   3'- -GGGCU-GCCUgCGGCACau---CUAGaa----CC- -5'
9122 5' -53.6 NC_002512.2 + 60864 0.66 0.994109
Target:  5'- gCCGcucGCGGACGCCGcccGGAUCg--- -3'
miRNA:   3'- gGGC---UGCCUGCGGCacaUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 80937 0.68 0.973247
Target:  5'- uCCCGGCGGuaggUGCCGUcccGGGUC-UGGc -3'
miRNA:   3'- -GGGCUGCCu---GCGGCAca-UCUAGaACC- -5'
9122 5' -53.6 NC_002512.2 + 88731 0.68 0.975758
Target:  5'- gUCG-CGGAagGUCGUGUAGAUCUgcacGGc -3'
miRNA:   3'- gGGCuGCCUg-CGGCACAUCUAGAa---CC- -5'
9122 5' -53.6 NC_002512.2 + 91917 0.69 0.96395
Target:  5'- -gCGGCGGcGCGCCGUcGgcggccgacuuGGUCUUGGg -3'
miRNA:   3'- ggGCUGCC-UGCGGCA-Cau---------CUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 92561 0.71 0.922217
Target:  5'- gCCCGACcaGCGCCG-GUAGGUCg--- -3'
miRNA:   3'- -GGGCUGccUGCGGCaCAUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 94866 0.66 0.992295
Target:  5'- cCCCGAUccuGGCGUCGUGUAGgAUgUcGGu -3'
miRNA:   3'- -GGGCUGc--CUGCGGCACAUC-UAgAaCC- -5'
9122 5' -53.6 NC_002512.2 + 95107 0.67 0.985797
Target:  5'- gCCCGG-GGACGCgG-GUGGggCUcGGa -3'
miRNA:   3'- -GGGCUgCCUGCGgCaCAUCuaGAaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.