miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 5' -53.6 NC_002512.2 + 105147 1.12 0.006207
Target:  5'- aCCCGACGGACGCCGUGUAGAUCUUGGc -3'
miRNA:   3'- -GGGCUGCCUGCGGCACAUCUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 128677 0.74 0.792948
Target:  5'- aCCCGGCGGACgggGCCGUcGU-GAUCggcaagGGg -3'
miRNA:   3'- -GGGCUGCCUG---CGGCA-CAuCUAGaa----CC- -5'
9122 5' -53.6 NC_002512.2 + 4193 0.74 0.810183
Target:  5'- uCCUGA-GGACGCCGg--AGAUCggUGGg -3'
miRNA:   3'- -GGGCUgCCUGCGGCacaUCUAGa-ACC- -5'
9122 5' -53.6 NC_002512.2 + 141141 0.73 0.842789
Target:  5'- uUCGA-GGACGCCGUGcAGAUCUa-- -3'
miRNA:   3'- gGGCUgCCUGCGGCACaUCUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 175578 0.72 0.865397
Target:  5'- aCCGGCGGGucaccacguCGCCGUGcGGGUCcuucgggUGGg -3'
miRNA:   3'- gGGCUGCCU---------GCGGCACaUCUAGa------ACC- -5'
9122 5' -53.6 NC_002512.2 + 211934 0.71 0.905213
Target:  5'- cCCCGACgGGACGuCCGUGgacgAGAg---GGu -3'
miRNA:   3'- -GGGCUG-CCUGC-GGCACa---UCUagaaCC- -5'
9122 5' -53.6 NC_002512.2 + 99212 0.71 0.916771
Target:  5'- cUCCG-CGGccgcCGCCGUGUGGGUCg--- -3'
miRNA:   3'- -GGGCuGCCu---GCGGCACAUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 98156 0.71 0.916771
Target:  5'- cCCCGGCGGuCGCCGc---GGUCU-GGa -3'
miRNA:   3'- -GGGCUGCCuGCGGCacauCUAGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 92561 0.71 0.922217
Target:  5'- gCCCGACcaGCGCCG-GUAGGUCg--- -3'
miRNA:   3'- -GGGCUGccUGCGGCaCAUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 132698 0.71 0.922217
Target:  5'- gCCgcaGACGGGCGUCGUGggcgAGAUCcucGGc -3'
miRNA:   3'- -GGg--CUGCCUGCGGCACa---UCUAGaa-CC- -5'
9122 5' -53.6 NC_002512.2 + 13419 0.7 0.932443
Target:  5'- cCCUGugGGACGCCGgcuaccUGGGcuUCUcgaUGGa -3'
miRNA:   3'- -GGGCugCCUGCGGCac----AUCU--AGA---ACC- -5'
9122 5' -53.6 NC_002512.2 + 111405 0.7 0.936754
Target:  5'- cCCCGGCagcucGGCGCCGUacucgauGUAGAUCUg-- -3'
miRNA:   3'- -GGGCUGc----CUGCGGCA-------CAUCUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 99264 0.69 0.954138
Target:  5'- cCCCGA-GGACGCCGgacgcgGGGUCgagcaGGa -3'
miRNA:   3'- -GGGCUgCCUGCGGCaca---UCUAGaa---CC- -5'
9122 5' -53.6 NC_002512.2 + 131961 0.69 0.961312
Target:  5'- gCCCGGCGGAuCGCgGUaGgcgaagaacgAGGUCgcgUGGg -3'
miRNA:   3'- -GGGCUGCCU-GCGgCA-Ca---------UCUAGa--ACC- -5'
9122 5' -53.6 NC_002512.2 + 145391 0.69 0.961312
Target:  5'- gCCCGACGcGGCGuCCGggGUccGGGUCUUc- -3'
miRNA:   3'- -GGGCUGC-CUGC-GGCa-CA--UCUAGAAcc -5'
9122 5' -53.6 NC_002512.2 + 91917 0.69 0.96395
Target:  5'- -gCGGCGGcGCGCCGUcGgcggccgacuuGGUCUUGGg -3'
miRNA:   3'- ggGCUGCC-UGCGGCA-Cau---------CUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 196631 0.69 0.96459
Target:  5'- gCCCGggugGCcGACGCCGUGU--GUCUgggGGg -3'
miRNA:   3'- -GGGC----UGcCUGCGGCACAucUAGAa--CC- -5'
9122 5' -53.6 NC_002512.2 + 152374 0.69 0.96459
Target:  5'- aCCGGCcGugGCCGgucGUAGAcaUCUgggGGa -3'
miRNA:   3'- gGGCUGcCugCGGCa--CAUCU--AGAa--CC- -5'
9122 5' -53.6 NC_002512.2 + 38934 0.69 0.96459
Target:  5'- gCCgCGGCGGGCGCCcgcGUGcgcccGGGUCU-GGu -3'
miRNA:   3'- -GG-GCUGCCUGCGG---CACa----UCUAGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 6439 0.69 0.96459
Target:  5'- gUCUGGCGGGCGCCGagacagGGGUCggccGGc -3'
miRNA:   3'- -GGGCUGCCUGCGGCaca---UCUAGaa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.