miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 5' -53.6 NC_002512.2 + 134214 0.67 0.987351
Target:  5'- gCCCGGCGGACGCgCGcucacgAGAggCUgugccgGGg -3'
miRNA:   3'- -GGGCUGCCUGCG-GCaca---UCUa-GAa-----CC- -5'
9122 5' -53.6 NC_002512.2 + 53890 0.68 0.980257
Target:  5'- aCCGACGGACGa-Gg--AGAUCUcGGu -3'
miRNA:   3'- gGGCUGCCUGCggCacaUCUAGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 109951 0.68 0.980257
Target:  5'- aCCGcguGCGGgggcgACGCCGcGcucgAGAUCUUGGu -3'
miRNA:   3'- gGGC---UGCC-----UGCGGCaCa---UCUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 119106 0.68 0.980257
Target:  5'- aCCUGGUGGGCGUCGUGUaccggcggcgGGAUCa--- -3'
miRNA:   3'- -GGGCUGCCUGCGGCACA----------UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 101664 0.67 0.982258
Target:  5'- gCCG-CGGACGCCGggccGAUCUa-- -3'
miRNA:   3'- gGGCuGCCUGCGGCacauCUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 130755 0.67 0.982258
Target:  5'- cCCCGACGauccgGCCGUGcgcGAUCUcuUGGa -3'
miRNA:   3'- -GGGCUGCcug--CGGCACau-CUAGA--ACC- -5'
9122 5' -53.6 NC_002512.2 + 35139 0.67 0.984102
Target:  5'- uCCCGACuGGCGCCcacgGUGgAGAUCg--- -3'
miRNA:   3'- -GGGCUGcCUGCGG----CACaUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 95107 0.67 0.985797
Target:  5'- gCCCGG-GGACGCgG-GUGGggCUcGGa -3'
miRNA:   3'- -GGGCUgCCUGCGgCaCAUCuaGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 45524 0.67 0.985797
Target:  5'- cCCgCGGCGGGCGgCGgcGgcGA-CUUGGg -3'
miRNA:   3'- -GG-GCUGCCUGCgGCa-CauCUaGAACC- -5'
9122 5' -53.6 NC_002512.2 + 152428 0.68 0.975758
Target:  5'- cCCCGGC-GACGCgCGUGgcGAUUUcgacGGg -3'
miRNA:   3'- -GGGCUGcCUGCG-GCACauCUAGAa---CC- -5'
9122 5' -53.6 NC_002512.2 + 99978 0.68 0.973247
Target:  5'- cCCCG-CGGugGCUGUGUcuguUCUcGGc -3'
miRNA:   3'- -GGGCuGCCugCGGCACAucu-AGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 80937 0.68 0.973247
Target:  5'- uCCCGGCGGuaggUGCCGUcccGGGUC-UGGc -3'
miRNA:   3'- -GGGCUGCCu---GCGGCAca-UCUAGaACC- -5'
9122 5' -53.6 NC_002512.2 + 4193 0.74 0.810183
Target:  5'- uCCUGA-GGACGCCGg--AGAUCggUGGg -3'
miRNA:   3'- -GGGCUgCCUGCGGCacaUCUAGa-ACC- -5'
9122 5' -53.6 NC_002512.2 + 141141 0.73 0.842789
Target:  5'- uUCGA-GGACGCCGUGcAGAUCUa-- -3'
miRNA:   3'- gGGCUgCCUGCGGCACaUCUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 99212 0.71 0.916771
Target:  5'- cUCCG-CGGccgcCGCCGUGUGGGUCg--- -3'
miRNA:   3'- -GGGCuGCCu---GCGGCACAUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 92561 0.71 0.922217
Target:  5'- gCCCGACcaGCGCCG-GUAGGUCg--- -3'
miRNA:   3'- -GGGCUGccUGCGGCaCAUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 13419 0.7 0.932443
Target:  5'- cCCUGugGGACGCCGgcuaccUGGGcuUCUcgaUGGa -3'
miRNA:   3'- -GGGCugCCUGCGGCac----AUCU--AGA---ACC- -5'
9122 5' -53.6 NC_002512.2 + 91917 0.69 0.96395
Target:  5'- -gCGGCGGcGCGCCGUcGgcggccgacuuGGUCUUGGg -3'
miRNA:   3'- ggGCUGCC-UGCGGCA-Cau---------CUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 6439 0.69 0.96459
Target:  5'- gUCUGGCGGGCGCCGagacagGGGUCggccGGc -3'
miRNA:   3'- -GGGCUGCCUGCGGCaca---UCUAGaa--CC- -5'
9122 5' -53.6 NC_002512.2 + 38934 0.69 0.96459
Target:  5'- gCCgCGGCGGGCGCCcgcGUGcgcccGGGUCU-GGu -3'
miRNA:   3'- -GG-GCUGCCUGCGG---CACa----UCUAGAaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.