miRNA display CGI


Results 41 - 60 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 223911 0.66 0.996318
Target:  5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3'
miRNA:   3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57354 0.66 0.995059
Target:  5'- gGCcugGUUGggGACGggGAUGccgaaGGGCa -3'
miRNA:   3'- gCG---CAGCuuCUGCuuCUGCug---CCUGc -5'
9131 5' -53.1 NC_002512.2 + 102938 0.66 0.996318
Target:  5'- aGCGccaGAGGGuCGAccgGGGCG-CGGGCGg -3'
miRNA:   3'- gCGCag-CUUCU-GCU---UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 38218 0.66 0.996318
Target:  5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3'
miRNA:   3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5'
9131 5' -53.1 NC_002512.2 + 3837 0.66 0.995059
Target:  5'- gGUGcCGAGGcCGAggucgcagucguAGACGgaGCGGACGu -3'
miRNA:   3'- gCGCaGCUUCuGCU------------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 129085 0.66 0.995059
Target:  5'- --gGUCGAccccgaggacGGGCGgcGucuGCGGCGGGCGg -3'
miRNA:   3'- gcgCAGCU----------UCUGCuuC---UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 88263 0.66 0.994309
Target:  5'- gGUGUUGGAGAgGu-GGCGGCaGGCGu -3'
miRNA:   3'- gCGCAGCUUCUgCuuCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 157168 0.66 0.996318
Target:  5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3'
miRNA:   3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 141905 0.66 0.995059
Target:  5'- cCGCGUCGggGcgccGCGGcccCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuC----UGCUucuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 66087 0.66 0.995059
Target:  5'- aGCuGUUGAcGAacuugaaGAGGACGugGGGCc -3'
miRNA:   3'- gCG-CAGCUuCUg------CUUCUGCugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 207511 0.66 0.996318
Target:  5'- cCGCGacCGAcGACGAGGACGG-GGcCGc -3'
miRNA:   3'- -GCGCa-GCUuCUGCUUCUGCUgCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 25569 0.66 0.994309
Target:  5'- gGCgGUUGAGGGCGAcGACcaGCGGAUc -3'
miRNA:   3'- gCG-CAGCUUCUGCUuCUGc-UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 77086 0.66 0.996318
Target:  5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3'
miRNA:   3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 103394 0.66 0.994309
Target:  5'- uCGCGcccaacgcCGggGAUccGGGCGACGcGACGa -3'
miRNA:   3'- -GCGCa-------GCuuCUGcuUCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 53368 0.66 0.995726
Target:  5'- aCGUGaCGGccaagcGGGCGcuggaauGGACGACGGGCu -3'
miRNA:   3'- -GCGCaGCU------UCUGCu------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 85351 0.66 0.995059
Target:  5'- gCGCGUCGcacACGAGGACcgcgcccacGCGGACc -3'
miRNA:   3'- -GCGCAGCuucUGCUUCUGc--------UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 130661 0.66 0.993471
Target:  5'- uGCG-CGggGcucucCGAGGACcggGACGGGCu -3'
miRNA:   3'- gCGCaGCuuCu----GCUUCUG---CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 154564 0.66 0.996262
Target:  5'- uCGCcaUGggGgggcaggauaacgGCGAGGGCGACGG-CGg -3'
miRNA:   3'- -GCGcaGCuuC-------------UGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 74875 0.66 0.994309
Target:  5'- cCGCaccCG-GGACGAcGGGCGACGGAUc -3'
miRNA:   3'- -GCGca-GCuUCUGCU-UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 86665 0.66 0.993471
Target:  5'- cCGCGUcCGAgcGGACGgcGcGCGAgggGGACGg -3'
miRNA:   3'- -GCGCA-GCU--UCUGCuuC-UGCUg--CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.