miRNA display CGI


Results 21 - 40 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 4553 0.66 0.995059
Target:  5'- gGCGgcgCGAccGACGGcugcggcgucugGGGCGGCGGAgGa -3'
miRNA:   3'- gCGCa--GCUu-CUGCU------------UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 57354 0.66 0.995059
Target:  5'- gGCcugGUUGggGACGggGAUGccgaaGGGCa -3'
miRNA:   3'- gCG---CAGCuuCUGCuuCUGCug---CCUGc -5'
9131 5' -53.1 NC_002512.2 + 129085 0.66 0.995059
Target:  5'- --gGUCGAccccgaggacGGGCGgcGucuGCGGCGGGCGg -3'
miRNA:   3'- gcgCAGCU----------UCUGCuuC---UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 102938 0.66 0.996318
Target:  5'- aGCGccaGAGGGuCGAccgGGGCG-CGGGCGg -3'
miRNA:   3'- gCGCag-CUUCU-GCU---UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 151851 0.66 0.993471
Target:  5'- gCGUGUCGGAcacGCGAccGGAUGACucguGGGCGc -3'
miRNA:   3'- -GCGCAGCUUc--UGCU--UCUGCUG----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 103394 0.66 0.994309
Target:  5'- uCGCGcccaacgcCGggGAUccGGGCGACGcGACGa -3'
miRNA:   3'- -GCGCa-------GCuuCUGcuUCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 154564 0.66 0.996262
Target:  5'- uCGCcaUGggGgggcaggauaacgGCGAGGGCGACGG-CGg -3'
miRNA:   3'- -GCGcaGCuuC-------------UGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 7729 0.66 0.994309
Target:  5'- gGCGUCGGgauagcGGuccuCGggGGCGGagccgGGGCGg -3'
miRNA:   3'- gCGCAGCU------UCu---GCuuCUGCUg----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 101643 0.66 0.995726
Target:  5'- cCGC-UCGAGGggagcGCGgcGGCcGCGGACGc -3'
miRNA:   3'- -GCGcAGCUUC-----UGCuuCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 135766 0.66 0.995059
Target:  5'- cCGCGUCcugGccGACGAgAGGCuGGCGGAgGa -3'
miRNA:   3'- -GCGCAG---CuuCUGCU-UCUG-CUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 130661 0.66 0.993471
Target:  5'- uGCG-CGggGcucucCGAGGACcggGACGGGCu -3'
miRNA:   3'- gCGCaGCuuCu----GCUUCUG---CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 124261 0.66 0.993471
Target:  5'- gGUcUCGGAGACc--GACGACGGcCGg -3'
miRNA:   3'- gCGcAGCUUCUGcuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 53368 0.66 0.995726
Target:  5'- aCGUGaCGGccaagcGGGCGcuggaauGGACGACGGGCu -3'
miRNA:   3'- -GCGCaGCU------UCUGCu------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 86665 0.66 0.993471
Target:  5'- cCGCGUcCGAgcGGACGgcGcGCGAgggGGACGg -3'
miRNA:   3'- -GCGCA-GCU--UCUGCuuC-UGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 32436 0.66 0.995059
Target:  5'- aGCGggCGAGGGaGAAGGaGuCGGACGg -3'
miRNA:   3'- gCGCa-GCUUCUgCUUCUgCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 88263 0.66 0.994309
Target:  5'- gGUGUUGGAGAgGu-GGCGGCaGGCGu -3'
miRNA:   3'- gCGCAGCUUCUgCuuCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 87117 0.66 0.995663
Target:  5'- gGCGgaacaucUCGGAGGCGGcgcacgagcuGGACaaGGCGGGCa -3'
miRNA:   3'- gCGC-------AGCUUCUGCU----------UCUG--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 141905 0.66 0.995059
Target:  5'- cCGCGUCGggGcgccGCGGcccCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuC----UGCUucuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 15097 0.66 0.995059
Target:  5'- cCGCGaccaGggGACccgGAGGGCGACcGGCGc -3'
miRNA:   3'- -GCGCag--CuuCUG---CUUCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 194851 0.66 0.993471
Target:  5'- uCGUGUUGAAcaACGAAGAUGuCGGAg- -3'
miRNA:   3'- -GCGCAGCUUc-UGCUUCUGCuGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.