miRNA display CGI


Results 21 - 40 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 75342 0.8 0.533514
Target:  5'- gGCGaCcGAGGCGGAGGCGGCGGACc -3'
miRNA:   3'- gCGCaGcUUCUGCUUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 89453 0.8 0.533514
Target:  5'- uGUGUCgGAAGGCGAGcGACG-CGGACGg -3'
miRNA:   3'- gCGCAG-CUUCUGCUU-CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 129842 0.79 0.552806
Target:  5'- uCGCGauggaggCGGAGGCGGAGGCGGaGGACGg -3'
miRNA:   3'- -GCGCa------GCUUCUGCUUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 90555 0.79 0.562531
Target:  5'- aGCGggaggaCGAGGGCGAGGGCGACGGcccCGg -3'
miRNA:   3'- gCGCa-----GCUUCUGCUUCUGCUGCCu--GC- -5'
9131 5' -53.1 NC_002512.2 + 128723 0.79 0.572302
Target:  5'- gGUGU-GGAGGCugGGAGACGGCGGACGg -3'
miRNA:   3'- gCGCAgCUUCUG--CUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11473 0.79 0.572302
Target:  5'- gGCGgagaccgCGAGGACGAcGACGACGGAg- -3'
miRNA:   3'- gCGCa------GCUUCUGCUuCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 60790 0.78 0.601828
Target:  5'- aCGCcccgCGAGGACGAGGACG-CGGGCc -3'
miRNA:   3'- -GCGca--GCUUCUGCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 226768 0.78 0.601828
Target:  5'- aCGCG--GAGGGCGAGGACGucuCGGGCGa -3'
miRNA:   3'- -GCGCagCUUCUGCUUCUGCu--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 97378 0.78 0.601828
Target:  5'- cCGCGgcggcCGGAGACGggGGCGgGCGcGACGa -3'
miRNA:   3'- -GCGCa----GCUUCUGCuuCUGC-UGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 99995 0.78 0.611721
Target:  5'- aGCGgaUCGucGGCGAGGGCGACGG-CGa -3'
miRNA:   3'- gCGC--AGCuuCUGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 93729 0.78 0.611721
Target:  5'- gGCGgaucgaCGggGACGggGACGG-GGACGg -3'
miRNA:   3'- gCGCa-----GCuuCUGCuuCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 16180 0.78 0.631543
Target:  5'- cCGaCGUCGAAGAagccaguuCGAGGACcGCGGGCGa -3'
miRNA:   3'- -GC-GCAGCUUCU--------GCUUCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 97332 0.78 0.631543
Target:  5'- gGgGUCGAGGGCGGAGAggcCGACGG-CGc -3'
miRNA:   3'- gCgCAGCUUCUGCUUCU---GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 82280 0.78 0.631543
Target:  5'- -cCGUCGAGGGuCGGgucgAGGCGACGGGCGu -3'
miRNA:   3'- gcGCAGCUUCU-GCU----UCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 132921 0.78 0.631543
Target:  5'- uCGCGggcgGAAGACGcGGACGACGGuCGg -3'
miRNA:   3'- -GCGCag--CUUCUGCuUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 90831 0.77 0.641458
Target:  5'- gGUGUUGAGGACGAAGAUGuugucguacuUGGACGa -3'
miRNA:   3'- gCGCAGCUUCUGCUUCUGCu---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 211131 0.77 0.651366
Target:  5'- gCGCGUCGAGGcCGAGGACc-UGGGCGu -3'
miRNA:   3'- -GCGCAGCUUCuGCUUCUGcuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 92737 0.77 0.651366
Target:  5'- gCGCGcUCGGuccgauGGCGccGACGACGGGCGa -3'
miRNA:   3'- -GCGC-AGCUu-----CUGCuuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 100221 0.77 0.66126
Target:  5'- aCGcCGUCG-AGGCGgcGuCGACGGGCGg -3'
miRNA:   3'- -GC-GCAGCuUCUGCuuCuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 130027 0.77 0.66126
Target:  5'- -aCGUCGAAGACGGAGACGaaguugagcagGCGGAa- -3'
miRNA:   3'- gcGCAGCUUCUGCUUCUGC-----------UGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.