miRNA display CGI


Results 1 - 20 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 98880 1.1 0.009894
Target:  5'- gCGCGUCGAAGACGAAGACGACGGACGa -3'
miRNA:   3'- -GCGCAGCUUCUGCUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 189872 0.89 0.171159
Target:  5'- gCGCGUCGGAGACGGcggAGACGGCGG-CGg -3'
miRNA:   3'- -GCGCAGCUUCUGCU---UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 212386 0.87 0.230667
Target:  5'- cCGaCGUCGAGaucgaggaggcggccGACGAGGACGACGGGCGg -3'
miRNA:   3'- -GC-GCAGCUU---------------CUGCUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 140906 0.86 0.268962
Target:  5'- cCGgGUCGAcGACGggGACGACGcGGCGg -3'
miRNA:   3'- -GCgCAGCUuCUGCuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 202512 0.84 0.315008
Target:  5'- gGCGgCGGAGGCGGAGGCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCUUCUGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 130185 0.84 0.322052
Target:  5'- gCGCGgaCGAGGACGAGGACGA-GGACGa -3'
miRNA:   3'- -GCGCa-GCUUCUGCUUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 148111 0.84 0.322052
Target:  5'- gGCGcCGAAGACG-AGGCGGCGGugGu -3'
miRNA:   3'- gCGCaGCUUCUGCuUCUGCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 51356 0.83 0.359024
Target:  5'- uCGaUGcCGGAGACGGAGAUGGCGGACGc -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 105782 0.82 0.413039
Target:  5'- gGCGUcgcauggucgacggCGAGGGCGAAGACGGCGGAg- -3'
miRNA:   3'- gCGCA--------------GCUUCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 109846 0.82 0.424086
Target:  5'- gGCGUCGggGAcCGGcguGGCGGCGGugGg -3'
miRNA:   3'- gCGCAGCuuCU-GCUu--CUGCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 43596 0.82 0.424086
Target:  5'- gGCGUCGcGGACGAGGACG-CGGAgGc -3'
miRNA:   3'- gCGCAGCuUCUGCUUCUGCuGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 166467 0.81 0.441422
Target:  5'- gGC-UCGAGGGCGggGACGGCGGgaccGCGg -3'
miRNA:   3'- gCGcAGCUUCUGCuuCUGCUGCC----UGC- -5'
9131 5' -53.1 NC_002512.2 + 225917 0.81 0.450239
Target:  5'- aCGCGUCGAccgaggGGACGAcGACGACGacGACGa -3'
miRNA:   3'- -GCGCAGCU------UCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 161695 0.81 0.477254
Target:  5'- gCGCGUgGAAGAUGGAGACG-CGGcCGg -3'
miRNA:   3'- -GCGCAgCUUCUGCUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 198007 0.8 0.486437
Target:  5'- aGCGggCGAcGGACGggGGCGAgGGACGc -3'
miRNA:   3'- gCGCa-GCU-UCUGCuuCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11369 0.8 0.490133
Target:  5'- uCGCGUCGGAcGACGAgggguccgacggcucGGACG-CGGACGa -3'
miRNA:   3'- -GCGCAGCUU-CUGCU---------------UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 80702 0.8 0.505047
Target:  5'- gGCGUCcgGggGGCGAGGGCGcgcgggcccGCGGGCGg -3'
miRNA:   3'- gCGCAG--CuuCUGCUUCUGC---------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 146699 0.8 0.514467
Target:  5'- gCGCGgaCGgcGACGGAGACGACGG-CGg -3'
miRNA:   3'- -GCGCa-GCuuCUGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 226710 0.8 0.533514
Target:  5'- gGCGUCGAGcGACgGGAGGCcGCGGGCGa -3'
miRNA:   3'- gCGCAGCUU-CUG-CUUCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228516 0.8 0.533514
Target:  5'- aCGCGgaggaGAGACGGAGGCGACGaGACGa -3'
miRNA:   3'- -GCGCagc--UUCUGCUUCUGCUGC-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.