miRNA display CGI


Results 1 - 20 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 64 0.76 0.707336
Target:  5'- gGCGUCGGucgcgggcgcgaggAGGCGAgAGGCGGCGGGgGg -3'
miRNA:   3'- gCGCAGCU--------------UCUGCU-UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 104 0.73 0.858963
Target:  5'- gGCGggu-GGGCGGAGGCGGCGGAg- -3'
miRNA:   3'- gCGCagcuUCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 174 0.76 0.729455
Target:  5'- gCGCGcCGGgagGGACGggGGCGAgaaggggccCGGGCGg -3'
miRNA:   3'- -GCGCaGCU---UCUGCuuCUGCU---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 216 0.66 0.995059
Target:  5'- aGgGagCGggGAcCGAAGGgcaGGCGGGCGg -3'
miRNA:   3'- gCgCa-GCuuCU-GCUUCUg--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 1260 0.69 0.973774
Target:  5'- cCGUcUCGucGACGGAcGACGAcCGGACu -3'
miRNA:   3'- -GCGcAGCuuCUGCUU-CUGCU-GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 1970 0.68 0.975286
Target:  5'- gGCGUCGGAGGCGgcG-CGuccgucuccgccuCGGACu -3'
miRNA:   3'- gCGCAGCUUCUGCuuCuGCu------------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 2824 0.68 0.976257
Target:  5'- gCGCGggcgCGGGccCGGAcGACGGCGGGCa -3'
miRNA:   3'- -GCGCa---GCUUcuGCUU-CUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 3062 0.68 0.9807
Target:  5'- gGCGgCGGAcGCGgcGGCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCUUcUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 3240 0.69 0.968252
Target:  5'- gCGCGUCGGGuGACGAcGGuCcGCGGGCu -3'
miRNA:   3'- -GCGCAGCUU-CUGCU-UCuGcUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 3472 0.74 0.835785
Target:  5'- cCGCGUcCGGAGACGcGGacGCGACGGGu- -3'
miRNA:   3'- -GCGCA-GCUUCUGCuUC--UGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 3837 0.66 0.995059
Target:  5'- gGUGcCGAGGcCGAggucgcagucguAGACGgaGCGGACGu -3'
miRNA:   3'- gCGCaGCUUCuGCU------------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 4023 0.68 0.978564
Target:  5'- uCGCGUCGGAGA----GACGACacccgGGACa -3'
miRNA:   3'- -GCGCAGCUUCUgcuuCUGCUG-----CCUGc -5'
9131 5' -53.1 NC_002512.2 + 4495 0.67 0.990348
Target:  5'- gGCGcCGucccCGAAGAgGAUGGACGc -3'
miRNA:   3'- gCGCaGCuucuGCUUCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 4553 0.66 0.995059
Target:  5'- gGCGgcgCGAccGACGGcugcggcgucugGGGCGGCGGAgGa -3'
miRNA:   3'- gCGCa--GCUu-CUGCU------------UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 4686 0.69 0.968252
Target:  5'- gGCGUUGAccaucGCGggGGCGAUGGuCa -3'
miRNA:   3'- gCGCAGCUuc---UGCuuCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 4744 0.72 0.906096
Target:  5'- uGCGUCGucGACGGcGGAagaGGCGGaACGg -3'
miRNA:   3'- gCGCAGCuuCUGCU-UCUg--CUGCC-UGC- -5'
9131 5' -53.1 NC_002512.2 + 5000 0.72 0.906096
Target:  5'- aCGgGUCGAAGGCGGc--CGGCGaGGCGg -3'
miRNA:   3'- -GCgCAGCUUCUGCUucuGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 5087 0.71 0.923059
Target:  5'- uCGuCGUCGccGGCGucGGCG-CGGGCGg -3'
miRNA:   3'- -GC-GCAGCuuCUGCuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 6395 0.67 0.989081
Target:  5'- uCGCGaCGGGcAgGGAGGCGGCGG-CGg -3'
miRNA:   3'- -GCGCaGCUUcUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 7729 0.66 0.994309
Target:  5'- gGCGUCGGgauagcGGuccuCGggGGCGGagccgGGGCGg -3'
miRNA:   3'- gCGCAGCU------UCu---GCuuCUGCUg----CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.