miRNA display CGI


Results 1 - 20 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 229619 0.66 0.995059
Target:  5'- aGgGagCGggGAcCGAAGGgcaGGCGGGCGg -3'
miRNA:   3'- gCgCa-GCuuCU-GCUUCUg--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 229577 0.76 0.729455
Target:  5'- gCGCGcCGGgagGGACGggGGCGAgaaggggccCGGGCGg -3'
miRNA:   3'- -GCGCaGCU---UCUGCuuCUGCU---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 229527 0.66 0.995726
Target:  5'- gGCGgcaGAGGAgGGAGAggaGGCGGuCGg -3'
miRNA:   3'- gCGCag-CUUCUgCUUCUg--CUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 229508 0.73 0.858963
Target:  5'- gGCGggu-GGGCGGAGGCGGCGGAg- -3'
miRNA:   3'- gCGCagcuUCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 229468 0.76 0.707336
Target:  5'- gGCGUCGGucgcgggcgcgaggAGGCGAgAGGCGGCGGGgGg -3'
miRNA:   3'- gCGCAGCU--------------UCUGCU-UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 229002 0.69 0.968252
Target:  5'- aGCG-CGGAGAgcgGGAGGCGagagaggagaGCGGACGg -3'
miRNA:   3'- gCGCaGCUUCUg--CUUCUGC----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228915 0.7 0.938006
Target:  5'- aCGCGagaGAGGACGAcgagaagagAGACaGACGGAgGg -3'
miRNA:   3'- -GCGCag-CUUCUGCU---------UCUG-CUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 228765 0.73 0.851422
Target:  5'- gGCGgaGGAGGCGAccgAGACGGCGGAg- -3'
miRNA:   3'- gCGCagCUUCUGCU---UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 228720 0.74 0.835785
Target:  5'- uGCGaaGAAGaacuGCGGAGACGgacGCGGACGg -3'
miRNA:   3'- gCGCagCUUC----UGCUUCUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228715 0.68 0.976257
Target:  5'- cCGUGUCGcGGGgGAAGACGugauGCGGGg- -3'
miRNA:   3'- -GCGCAGCuUCUgCUUCUGC----UGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 228648 0.66 0.993471
Target:  5'- gGCGagGAcaagaaagagAGGCGggGAgGACGGGg- -3'
miRNA:   3'- gCGCagCU----------UCUGCuuCUgCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 228587 0.67 0.987687
Target:  5'- uCGUGUCGgcGGC--AGGCGcCGGACc -3'
miRNA:   3'- -GCGCAGCuuCUGcuUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 228516 0.8 0.533514
Target:  5'- aCGCGgaggaGAGACGGAGGCGACGaGACGa -3'
miRNA:   3'- -GCGCagc--UUCUGCUUCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 228418 0.73 0.850657
Target:  5'- gGCGcUgGggGGCGggGGCGggaacggggaggaGCGGACGc -3'
miRNA:   3'- gCGC-AgCuuCUGCuuCUGC-------------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228250 0.69 0.971107
Target:  5'- aCGUGcCGGAcGCGggGGCGACuGACc -3'
miRNA:   3'- -GCGCaGCUUcUGCuuCUGCUGcCUGc -5'
9131 5' -53.1 NC_002512.2 + 228213 0.73 0.866312
Target:  5'- cCGCgGUCGAggccGGGCG-AGACGGCGGGa- -3'
miRNA:   3'- -GCG-CAGCU----UCUGCuUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 228113 0.67 0.98826
Target:  5'- gGCGUCGGccgcaacgucgugcuGGGCGc---CGACGGGCGc -3'
miRNA:   3'- gCGCAGCU---------------UCUGCuucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228057 0.68 0.982673
Target:  5'- cCGCGgaCGGcugcGGCGcggGAGACGACGGGCu -3'
miRNA:   3'- -GCGCa-GCUu---CUGC---UUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 228020 0.73 0.851422
Target:  5'- aCGCGggaCGAgGGGCGAccGGACGGCGG-CGa -3'
miRNA:   3'- -GCGCa--GCU-UCUGCU--UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 227987 0.71 0.923059
Target:  5'- gGCGcCGAGGGcCGAGGGcCGGagcCGGACGg -3'
miRNA:   3'- gCGCaGCUUCU-GCUUCU-GCU---GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.