miRNA display CGI


Results 1 - 20 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 9964 0.76 0.719883
Target:  5'- gCGCGUCGAcggAGACc--GACGACGaGACGa -3'
miRNA:   3'- -GCGCAGCU---UCUGcuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 97332 0.78 0.631543
Target:  5'- gGgGUCGAGGGCGGAGAggcCGACGG-CGc -3'
miRNA:   3'- gCgCAGCUUCUGCUUCU---GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 16180 0.78 0.631543
Target:  5'- cCGaCGUCGAAGAagccaguuCGAGGACcGCGGGCGa -3'
miRNA:   3'- -GC-GCAGCUUCU--------GCUUCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 82280 0.78 0.631543
Target:  5'- -cCGUCGAGGGuCGGgucgAGGCGACGGGCGu -3'
miRNA:   3'- gcGCAGCUUCU-GCU----UCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 100221 0.77 0.66126
Target:  5'- aCGcCGUCG-AGGCGgcGuCGACGGGCGg -3'
miRNA:   3'- -GC-GCAGCuUCUGCuuCuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 64 0.76 0.707336
Target:  5'- gGCGUCGGucgcgggcgcgaggAGGCGAgAGGCGGCGGGgGg -3'
miRNA:   3'- gCGCAGCU--------------UCUGCU-UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 229468 0.76 0.707336
Target:  5'- gGCGUCGGucgcgggcgcgaggAGGCGAgAGGCGGCGGGgGg -3'
miRNA:   3'- gCGCAGCU--------------UCUGCU-UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 149837 0.76 0.710241
Target:  5'- uCGCGUCGcGGACGGAGAUGG-GGAUc -3'
miRNA:   3'- -GCGCAGCuUCUGCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 108410 0.76 0.719883
Target:  5'- gGgGggGAGGACGggGACGGCGG-CGg -3'
miRNA:   3'- gCgCagCUUCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 97378 0.78 0.601828
Target:  5'- cCGCGgcggcCGGAGACGggGGCGgGCGcGACGa -3'
miRNA:   3'- -GCGCa----GCUUCUGCuuCUGC-UGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 60790 0.78 0.601828
Target:  5'- aCGCcccgCGAGGACGAGGACG-CGGGCc -3'
miRNA:   3'- -GCGca--GCUUCUGCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 11473 0.79 0.572302
Target:  5'- gGCGgagaccgCGAGGACGAcGACGACGGAg- -3'
miRNA:   3'- gCGCa------GCUUCUGCUuCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 130185 0.84 0.322052
Target:  5'- gCGCGgaCGAGGACGAGGACGA-GGACGa -3'
miRNA:   3'- -GCGCa-GCUUCUGCUUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51356 0.83 0.359024
Target:  5'- uCGaUGcCGGAGACGGAGAUGGCGGACGc -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 43596 0.82 0.424086
Target:  5'- gGCGUCGcGGACGAGGACG-CGGAgGc -3'
miRNA:   3'- gCGCAGCuUCUGCUUCUGCuGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 11369 0.8 0.490133
Target:  5'- uCGCGUCGGAcGACGAgggguccgacggcucGGACG-CGGACGa -3'
miRNA:   3'- -GCGCAGCUU-CUGCU---------------UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 80702 0.8 0.505047
Target:  5'- gGCGUCcgGggGGCGAGGGCGcgcgggcccGCGGGCGg -3'
miRNA:   3'- gCGCAG--CuuCUGCUUCUGC---------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 89453 0.8 0.533514
Target:  5'- uGUGUCgGAAGGCGAGcGACG-CGGACGg -3'
miRNA:   3'- gCGCAG-CUUCUGCUU-CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 129842 0.79 0.552806
Target:  5'- uCGCGauggaggCGGAGGCGGAGGCGGaGGACGg -3'
miRNA:   3'- -GCGCa------GCUUCUGCUUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 128723 0.79 0.572302
Target:  5'- gGUGU-GGAGGCugGGAGACGGCGGACGg -3'
miRNA:   3'- gCGCAgCUUCUG--CUUCUGCUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.