Results 1 - 20 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 88758 | 0.66 | 0.996535 |
Target: 5'- gGCGUCcucgaaacugaucuuGAAG--GggGACGGCgGGACGg -3' miRNA: 3'- gCGCAG---------------CUUCugCuuCUGCUG-CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 106562 | 0.66 | 0.995726 |
Target: 5'- aGCGgccCGAAGuc---GACGGCGGACa -3' miRNA: 3'- gCGCa--GCUUCugcuuCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 156518 | 0.66 | 0.995726 |
Target: 5'- gGCGgCGggGcGCGggGGucCGGCGG-CGg -3' miRNA: 3'- gCGCaGCuuC-UGCuuCU--GCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 98880 | 1.1 | 0.009894 |
Target: 5'- gCGCGUCGAAGACGAAGACGACGGACGa -3' miRNA: 3'- -GCGCAGCUUCUGCUUCUGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 157168 | 0.66 | 0.996318 |
Target: 5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3' miRNA: 3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 221589 | 0.66 | 0.996318 |
Target: 5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3' miRNA: 3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 77086 | 0.66 | 0.996318 |
Target: 5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3' miRNA: 3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 38218 | 0.66 | 0.996318 |
Target: 5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3' miRNA: 3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 195616 | 0.66 | 0.996318 |
Target: 5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3' miRNA: 3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 118029 | 0.66 | 0.995726 |
Target: 5'- -aCGaCGAGGACGc-GGCGACGG-CGg -3' miRNA: 3'- gcGCaGCUUCUGCuuCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 120478 | 0.66 | 0.996148 |
Target: 5'- uCGCGaagaGGAGACGcugGGGACGACGccgccgaucgcgguGACGg -3' miRNA: 3'- -GCGCag--CUUCUGC---UUCUGCUGC--------------CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 223911 | 0.66 | 0.996318 |
Target: 5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3' miRNA: 3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 41294 | 0.66 | 0.996482 |
Target: 5'- gGCGUCcuugcggaagGAAGACGGAauuuucguuguccccGAacacgaccggaucCGACGGACGa -3' miRNA: 3'- gCGCAG----------CUUCUGCUU---------------CU-------------GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 217898 | 0.66 | 0.995726 |
Target: 5'- cCGCGUCGucGAgCGgcGGuacgaGACGGugGc -3' miRNA: 3'- -GCGCAGCuuCU-GCuuCUg----CUGCCugC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 207511 | 0.66 | 0.996318 |
Target: 5'- cCGCGacCGAcGACGAGGACGG-GGcCGc -3' miRNA: 3'- -GCGCa-GCUuCUGCUUCUGCUgCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 95443 | 0.66 | 0.996318 |
Target: 5'- uCGuCGUUGAAGGCcAGGGCGAggaacccccUGGGCa -3' miRNA: 3'- -GC-GCAGCUUCUGcUUCUGCU---------GCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 128034 | 0.66 | 0.995726 |
Target: 5'- gGCGUCGAAGAgcugcaCGGcccCGACGGucGCGg -3' miRNA: 3'- gCGCAGCUUCU------GCUucuGCUGCC--UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 201343 | 0.66 | 0.995726 |
Target: 5'- aGCGUgGccGACaucgGgcGGCGGCGGACc -3' miRNA: 3'- gCGCAgCuuCUG----CuuCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 204875 | 0.66 | 0.996318 |
Target: 5'- cCGCGacCGAcGGCGAgcucucGGACGGCGaGCGg -3' miRNA: 3'- -GCGCa-GCUuCUGCU------UCUGCUGCcUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 121163 | 0.66 | 0.996318 |
Target: 5'- cCGCGgcccAGGGCG-AGGCGuucuCGGACGa -3' miRNA: 3'- -GCGCagc-UUCUGCuUCUGCu---GCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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