miRNA display CGI


Results 1 - 20 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 88263 0.66 0.994309
Target:  5'- gGUGUUGGAGAgGu-GGCGGCaGGCGu -3'
miRNA:   3'- gCGCAGCUUCUgCuuCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 66087 0.66 0.995059
Target:  5'- aGCuGUUGAcGAacuugaaGAGGACGugGGGCc -3'
miRNA:   3'- gCG-CAGCUuCUg------CUUCUGCugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 57354 0.66 0.995059
Target:  5'- gGCcugGUUGggGACGggGAUGccgaaGGGCa -3'
miRNA:   3'- gCG---CAGCuuCUGCuuCUGCug---CCUGc -5'
9131 5' -53.1 NC_002512.2 + 74875 0.66 0.994309
Target:  5'- cCGCaccCG-GGACGAcGGGCGACGGAUc -3'
miRNA:   3'- -GCGca-GCuUCUGCU-UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 19678 0.66 0.994309
Target:  5'- cCGCGUCuccgucucGGACGAucAGACGGuCgGGACGc -3'
miRNA:   3'- -GCGCAGcu------UCUGCU--UCUGCU-G-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 32436 0.66 0.995059
Target:  5'- aGCGggCGAGGGaGAAGGaGuCGGACGg -3'
miRNA:   3'- gCGCa-GCUUCUgCUUCUgCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 103394 0.66 0.994309
Target:  5'- uCGCGcccaacgcCGggGAUccGGGCGACGcGACGa -3'
miRNA:   3'- -GCGCa-------GCuuCUGcuUCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 124261 0.66 0.993471
Target:  5'- gGUcUCGGAGACc--GACGACGGcCGg -3'
miRNA:   3'- gCGcAGCUUCUGcuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 9021 0.66 0.995059
Target:  5'- aGCGcCGAGGcccCGcGGACGACGuaGACGc -3'
miRNA:   3'- gCGCaGCUUCu--GCuUCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 51110 0.66 0.994309
Target:  5'- gCGCugaaGUCGAAGuacauCGAGaACGACGcGACGu -3'
miRNA:   3'- -GCG----CAGCUUCu----GCUUcUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 130661 0.66 0.993471
Target:  5'- uGCG-CGggGcucucCGAGGACcggGACGGGCu -3'
miRNA:   3'- gCGCaGCuuCu----GCUUCUG---CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 54752 0.66 0.993471
Target:  5'- uGCGUgGAcaccaAGACGuggcGGGCGGUGGACa -3'
miRNA:   3'- gCGCAgCU-----UCUGCu---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 15585 0.66 0.993471
Target:  5'- uGCGgcacgcCGAAGACGAAGGUGAagcccuCGGGCc -3'
miRNA:   3'- gCGCa-----GCUUCUGCUUCUGCU------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 151851 0.66 0.993471
Target:  5'- gCGUGUCGGAcacGCGAccGGAUGACucguGGGCGc -3'
miRNA:   3'- -GCGCAGCUUc--UGCU--UCUGCUG----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 3837 0.66 0.995059
Target:  5'- gGUGcCGAGGcCGAggucgcagucguAGACGgaGCGGACGu -3'
miRNA:   3'- gCGCaGCUUCuGCU------------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 86665 0.66 0.993471
Target:  5'- cCGCGUcCGAgcGGACGgcGcGCGAgggGGACGg -3'
miRNA:   3'- -GCGCA-GCU--UCUGCuuC-UGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 4553 0.66 0.995059
Target:  5'- gGCGgcgCGAccGACGGcugcggcgucugGGGCGGCGGAgGa -3'
miRNA:   3'- gCGCa--GCUu-CUGCU------------UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 7729 0.66 0.994309
Target:  5'- gGCGUCGGgauagcGGuccuCGggGGCGGagccgGGGCGg -3'
miRNA:   3'- gCGCAGCU------UCu---GCuuCUGCUg----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 25569 0.66 0.994309
Target:  5'- gGCgGUUGAGGGCGAcGACcaGCGGAUc -3'
miRNA:   3'- gCG-CAGCUUCUGCUuCUGc-UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 194851 0.66 0.993471
Target:  5'- uCGUGUUGAAcaACGAAGAUGuCGGAg- -3'
miRNA:   3'- -GCGCAGCUUc-UGCUUCUGCuGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.