miRNA display CGI


Results 21 - 40 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 8741 0.69 0.971107
Target:  5'- cCGCccGUCGAcGACGggGACG-CGGuCc -3'
miRNA:   3'- -GCG--CAGCUuCUGCuuCUGCuGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 8936 0.7 0.938006
Target:  5'- cCGgGUCGgcGAUGAAGAgcgcguucCGACGGuaGCGg -3'
miRNA:   3'- -GCgCAGCuuCUGCUUCU--------GCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 9021 0.66 0.995059
Target:  5'- aGCGcCGAGGcccCGcGGACGACGuaGACGc -3'
miRNA:   3'- gCGCaGCUUCu--GCuUCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 9483 0.71 0.928266
Target:  5'- gGCGggcccgCGAGcGGCGGguAGACGACGGcCGg -3'
miRNA:   3'- gCGCa-----GCUU-CUGCU--UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 9964 0.76 0.719883
Target:  5'- gCGCGUCGAcggAGACc--GACGACGaGACGa -3'
miRNA:   3'- -GCGCAGCU---UCUGcuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 10430 0.7 0.954829
Target:  5'- cCGCGUCGucgccgucGGGcACGggGGCG-CGGAgGa -3'
miRNA:   3'- -GCGCAGC--------UUC-UGCuuCUGCuGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 10935 0.67 0.987687
Target:  5'- gGCGaCGGAGGgGucGACGA-GGACGc -3'
miRNA:   3'- gCGCaGCUUCUgCuuCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11071 0.72 0.887154
Target:  5'- cCGCG--GAGGGCG-AGACGgaGCGGACGg -3'
miRNA:   3'- -GCGCagCUUCUGCuUCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11369 0.8 0.490133
Target:  5'- uCGCGUCGGAcGACGAgggguccgacggcucGGACG-CGGACGa -3'
miRNA:   3'- -GCGCAGCUU-CUGCU---------------UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11413 0.74 0.814426
Target:  5'- cCGCGggaCGAGGagaugaccgcgguccGCGggGACGccGCGGACGg -3'
miRNA:   3'- -GCGCa--GCUUC---------------UGCuuCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11473 0.79 0.572302
Target:  5'- gGCGgagaccgCGAGGACGAcGACGACGGAg- -3'
miRNA:   3'- gCGCa------GCUUCUGCUuCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 11537 0.76 0.729455
Target:  5'- aCGgGaUCGAccuGGACGAGGACGAggaGGACGa -3'
miRNA:   3'- -GCgC-AGCU---UCUGCUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11680 0.69 0.973774
Target:  5'- cCGCGgccCG-AGGCGggGGCccGAgGGGCGa -3'
miRNA:   3'- -GCGCa--GCuUCUGCuuCUG--CUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11721 0.68 0.976257
Target:  5'- gGCGUaccgaggcuaCGggGACGAGGccgggaGCGACGacGACGa -3'
miRNA:   3'- gCGCA----------GCuuCUGCUUC------UGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 13491 0.67 0.991498
Target:  5'- uGCGgcCGAAcaacACGGAGACGGCGGcCa -3'
miRNA:   3'- gCGCa-GCUUc---UGCUUCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 13983 0.7 0.942542
Target:  5'- aCGgGgaagGggGACGGggGGACGAgGGACGa -3'
miRNA:   3'- -GCgCag--CuuCUGCU--UCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 14313 0.68 0.984491
Target:  5'- aCGgGUUGuAGGCGuAGACGACgccgaGGGCGc -3'
miRNA:   3'- -GCgCAGCuUCUGCuUCUGCUG-----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 14529 0.67 0.990348
Target:  5'- aGCG-CGc-GACGGAGuCGACGGAg- -3'
miRNA:   3'- gCGCaGCuuCUGCUUCuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 14945 0.67 0.987687
Target:  5'- uGCGUCcgcggccacggGAGGACGAAccgcGGCcGCGGugGa -3'
miRNA:   3'- gCGCAG-----------CUUCUGCUU----CUGcUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 15097 0.66 0.995059
Target:  5'- cCGCGaccaGggGACccgGAGGGCGACcGGCGc -3'
miRNA:   3'- -GCGCag--CuuCUG---CUUCUGCUGcCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.