miRNA display CGI


Results 21 - 40 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 154564 0.66 0.996262
Target:  5'- uCGCcaUGggGgggcaggauaacgGCGAGGGCGACGG-CGg -3'
miRNA:   3'- -GCGcaGCuuC-------------UGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 120478 0.66 0.996148
Target:  5'- uCGCGaagaGGAGACGcugGGGACGACGccgccgaucgcgguGACGg -3'
miRNA:   3'- -GCGCag--CUUCUGC---UUCUGCUGC--------------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 83477 0.66 0.996148
Target:  5'- gCGCGcagcuUCGGggGGACGAcguagacgggguugAGGCGGCGGcACa -3'
miRNA:   3'- -GCGC-----AGCU--UCUGCU--------------UCUGCUGCC-UGc -5'
9131 5' -53.1 NC_002512.2 + 156518 0.66 0.995726
Target:  5'- gGCGgCGggGcGCGggGGucCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCuuC-UGCuuCU--GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 51776 0.66 0.995726
Target:  5'- aGCGagGAGGAC-AAGAaaGCGGugGa -3'
miRNA:   3'- gCGCagCUUCUGcUUCUgcUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 118029 0.66 0.995726
Target:  5'- -aCGaCGAGGACGc-GGCGACGG-CGg -3'
miRNA:   3'- gcGCaGCUUCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 53368 0.66 0.995726
Target:  5'- aCGUGaCGGccaagcGGGCGcuggaauGGACGACGGGCu -3'
miRNA:   3'- -GCGCaGCU------UCUGCu------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 201343 0.66 0.995726
Target:  5'- aGCGUgGccGACaucgGgcGGCGGCGGACc -3'
miRNA:   3'- gCGCAgCuuCUG----CuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 130474 0.66 0.995726
Target:  5'- aGCGggggCGGAGACGAAGcCGcccCGGGa- -3'
miRNA:   3'- gCGCa---GCUUCUGCUUCuGCu--GCCUgc -5'
9131 5' -53.1 NC_002512.2 + 106562 0.66 0.995726
Target:  5'- aGCGgccCGAAGuc---GACGGCGGACa -3'
miRNA:   3'- gCGCa--GCUUCugcuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 100134 0.66 0.995726
Target:  5'- -cCGUCGuGGACG---GCGGCGGACc -3'
miRNA:   3'- gcGCAGCuUCUGCuucUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 229527 0.66 0.995726
Target:  5'- gGCGgcaGAGGAgGGAGAggaGGCGGuCGg -3'
miRNA:   3'- gCGCag-CUUCUgCUUCUg--CUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 90188 0.66 0.995726
Target:  5'- uCGCGa-GAGGAgCGGuaaccAGACGACGGuCGu -3'
miRNA:   3'- -GCGCagCUUCU-GCU-----UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 36564 0.66 0.995726
Target:  5'- cCGC--UGGAGcCgGGAGGCGGCGGugGa -3'
miRNA:   3'- -GCGcaGCUUCuG-CUUCUGCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 101643 0.66 0.995726
Target:  5'- cCGC-UCGAGGggagcGCGgcGGCcGCGGACGc -3'
miRNA:   3'- -GCGcAGCUUC-----UGCuuCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 128034 0.66 0.995726
Target:  5'- gGCGUCGAAGAgcugcaCGGcccCGACGGucGCGg -3'
miRNA:   3'- gCGCAGCUUCU------GCUucuGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 15450 0.66 0.995726
Target:  5'- uCGcCGaCGuAGACGggGACGcgguccuCGGGCGc -3'
miRNA:   3'- -GC-GCaGCuUCUGCuuCUGCu------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 217898 0.66 0.995726
Target:  5'- cCGCGUCGucGAgCGgcGGuacgaGACGGugGc -3'
miRNA:   3'- -GCGCAGCuuCU-GCuuCUg----CUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 87117 0.66 0.995663
Target:  5'- gGCGgaacaucUCGGAGGCGGcgcacgagcuGGACaaGGCGGGCa -3'
miRNA:   3'- gCGC-------AGCUUCUGCU----------UCUG--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 135766 0.66 0.995059
Target:  5'- cCGCGUCcugGccGACGAgAGGCuGGCGGAgGa -3'
miRNA:   3'- -GCGCAG---CuuCUGCU-UCUG-CUGCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.