miRNA display CGI


Results 41 - 60 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 103457 0.66 0.995059
Target:  5'- gCGCGggucCGAGGACGcGGcucgggucucgGCGGCGGccGCGg -3'
miRNA:   3'- -GCGCa---GCUUCUGCuUC-----------UGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 229619 0.66 0.995059
Target:  5'- aGgGagCGggGAcCGAAGGgcaGGCGGGCGg -3'
miRNA:   3'- gCgCa-GCuuCU-GCUUCUg--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 32436 0.66 0.995059
Target:  5'- aGCGggCGAGGGaGAAGGaGuCGGACGg -3'
miRNA:   3'- gCGCa-GCUUCUgCUUCUgCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 216 0.66 0.995059
Target:  5'- aGgGagCGggGAcCGAAGGgcaGGCGGGCGg -3'
miRNA:   3'- gCgCa-GCuuCU-GCUUCUg--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 141905 0.66 0.995059
Target:  5'- cCGCGUCGggGcgccGCGGcccCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuC----UGCUucuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 3837 0.66 0.995059
Target:  5'- gGUGcCGAGGcCGAggucgcagucguAGACGgaGCGGACGu -3'
miRNA:   3'- gCGCaGCUUCuGCU------------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 33439 0.66 0.995059
Target:  5'- uCGUGaUCGGAGaacuGCGAucuccGGuCGugGGACGa -3'
miRNA:   3'- -GCGC-AGCUUC----UGCU-----UCuGCugCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57354 0.66 0.995059
Target:  5'- gGCcugGUUGggGACGggGAUGccgaaGGGCa -3'
miRNA:   3'- gCG---CAGCuuCUGCuuCUGCug---CCUGc -5'
9131 5' -53.1 NC_002512.2 + 66087 0.66 0.995059
Target:  5'- aGCuGUUGAcGAacuugaaGAGGACGugGGGCc -3'
miRNA:   3'- gCG-CAGCUuCUg------CUUCUGCugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 9021 0.66 0.995059
Target:  5'- aGCGcCGAGGcccCGcGGACGACGuaGACGc -3'
miRNA:   3'- gCGCaGCUUCu--GCuUCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 100302 0.66 0.995059
Target:  5'- -uCGUCGggGGCGAcgGGGcCGACGucccGGCGc -3'
miRNA:   3'- gcGCAGCuuCUGCU--UCU-GCUGC----CUGC- -5'
9131 5' -53.1 NC_002512.2 + 85351 0.66 0.995059
Target:  5'- gCGCGUCGcacACGAGGACcgcgcccacGCGGACc -3'
miRNA:   3'- -GCGCAGCuucUGCUUCUGc--------UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 15097 0.66 0.995059
Target:  5'- cCGCGaccaGggGACccgGAGGGCGACcGGCGc -3'
miRNA:   3'- -GCGCag--CuuCUG---CUUCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 129085 0.66 0.995059
Target:  5'- --gGUCGAccccgaggacGGGCGgcGucuGCGGCGGGCGg -3'
miRNA:   3'- gcgCAGCU----------UCUGCuuC---UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 4553 0.66 0.995059
Target:  5'- gGCGgcgCGAccGACGGcugcggcgucugGGGCGGCGGAgGa -3'
miRNA:   3'- gCGCa--GCUu-CUGCU------------UCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 133283 0.66 0.995059
Target:  5'- gGCGaUUGAGGGCGAggggaucaucgaAGACGcCGG-CGa -3'
miRNA:   3'- gCGC-AGCUUCUGCU------------UCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 29748 0.66 0.995059
Target:  5'- gCGCG-CGAGGGggccCGgcGAuCGACGcGACGg -3'
miRNA:   3'- -GCGCaGCUUCU----GCuuCU-GCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 135766 0.66 0.995059
Target:  5'- cCGCGUCcugGccGACGAgAGGCuGGCGGAgGa -3'
miRNA:   3'- -GCGCAG---CuuCUGCU-UCUG-CUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 88414 0.66 0.994843
Target:  5'- aCGUugugGUCcAGGGCGAAGACGAaaccgcaggcguccCGGACc -3'
miRNA:   3'- -GCG----CAGcUUCUGCUUCUGCU--------------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 97079 0.66 0.994843
Target:  5'- uGCGgaucuucuuccggaaGGAcGGCGggGGCGACGGcaaGCGg -3'
miRNA:   3'- gCGCag-------------CUU-CUGCuuCUGCUGCC---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.