miRNA display CGI


Results 61 - 80 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 74875 0.66 0.994309
Target:  5'- cCGCaccCG-GGACGAcGGGCGACGGAUc -3'
miRNA:   3'- -GCGca-GCuUCUGCU-UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 88263 0.66 0.994309
Target:  5'- gGUGUUGGAGAgGu-GGCGGCaGGCGu -3'
miRNA:   3'- gCGCAGCUUCUgCuuCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 25569 0.66 0.994309
Target:  5'- gGCgGUUGAGGGCGAcGACcaGCGGAUc -3'
miRNA:   3'- gCG-CAGCUUCUGCUuCUGc-UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 199504 0.66 0.994309
Target:  5'- cCGCGagGAucAGGuCGAGGuCGuCGGGCGa -3'
miRNA:   3'- -GCGCagCU--UCU-GCUUCuGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 203106 0.66 0.994309
Target:  5'- aCGUcUCGAAGGCcAGGGCGuCGGcCGa -3'
miRNA:   3'- -GCGcAGCUUCUGcUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 76095 0.66 0.994309
Target:  5'- gGCGaUCGGaagcugAGGCGggGGCGcCGGGg- -3'
miRNA:   3'- gCGC-AGCU------UCUGCuuCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 223101 0.66 0.994309
Target:  5'- uGCGUCGAcggGGAgGggGAUccGCGGGuCGa -3'
miRNA:   3'- gCGCAGCU---UCUgCuuCUGc-UGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 119986 0.66 0.994309
Target:  5'- gCGCGaCGccGACGAGGGCaa-GGACa -3'
miRNA:   3'- -GCGCaGCuuCUGCUUCUGcugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 119544 0.66 0.994309
Target:  5'- gGCuaggCGggGAgCGggGACcgGGCGGACc -3'
miRNA:   3'- gCGca--GCuuCU-GCuuCUG--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 148463 0.66 0.994309
Target:  5'- cCGCGggaCGGAGccGCGAcGGCGGggaGGACGa -3'
miRNA:   3'- -GCGCa--GCUUC--UGCUuCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 168137 0.66 0.994309
Target:  5'- cCGCGgCGAggggcugggGGugGggGGCGGagaggGGACGc -3'
miRNA:   3'- -GCGCaGCU---------UCugCuuCUGCUg----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 19678 0.66 0.994309
Target:  5'- cCGCGUCuccgucucGGACGAucAGACGGuCgGGACGc -3'
miRNA:   3'- -GCGCAGcu------UCUGCU--UCUGCU-G-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51110 0.66 0.994309
Target:  5'- gCGCugaaGUCGAAGuacauCGAGaACGACGcGACGu -3'
miRNA:   3'- -GCG----CAGCUUCu----GCUUcUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 7729 0.66 0.994309
Target:  5'- gGCGUCGGgauagcGGuccuCGggGGCGGagccgGGGCGg -3'
miRNA:   3'- gCGCAGCU------UCu---GCuuCUGCUg----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 157258 0.66 0.994309
Target:  5'- -cCGUCGAccGGCGAGGACGuguuCGuGGCGc -3'
miRNA:   3'- gcGCAGCUu-CUGCUUCUGCu---GC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 103394 0.66 0.994309
Target:  5'- uCGCGcccaacgcCGggGAUccGGGCGACGcGACGa -3'
miRNA:   3'- -GCGCa-------GCuuCUGcuUCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 219681 0.66 0.994309
Target:  5'- gCGCGccgccCGAGGACGAGGAgGAgCGucGGCGc -3'
miRNA:   3'- -GCGCa----GCUUCUGCUUCUgCU-GC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 113835 0.66 0.993985
Target:  5'- gGCGaUGAAGACGGAGAagugcuugggcaaGACGGcCa -3'
miRNA:   3'- gCGCaGCUUCUGCUUCUg------------CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 194851 0.66 0.993471
Target:  5'- uCGUGUUGAAcaACGAAGAUGuCGGAg- -3'
miRNA:   3'- -GCGCAGCUUc-UGCUUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 86665 0.66 0.993471
Target:  5'- cCGCGUcCGAgcGGACGgcGcGCGAgggGGACGg -3'
miRNA:   3'- -GCGCA-GCU--UCUGCuuC-UGCUg--CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.