miRNA display CGI


Results 41 - 60 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 15401 0.68 0.984491
Target:  5'- cCGCa--GGAGGCgGAAGACGccGCGGugGa -3'
miRNA:   3'- -GCGcagCUUCUG-CUUCUGC--UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 15450 0.66 0.995726
Target:  5'- uCGcCGaCGuAGACGggGACGcgguccuCGGGCGc -3'
miRNA:   3'- -GC-GCaGCuUCUGCuuCUGCu------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 15585 0.66 0.993471
Target:  5'- uGCGgcacgcCGAAGACGAAGGUGAagcccuCGGGCc -3'
miRNA:   3'- gCGCa-----GCUUCUGCUUCUGCU------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 15830 0.7 0.950951
Target:  5'- gGgGUCGuagagguAGACGgcGGUGACGGGCGa -3'
miRNA:   3'- gCgCAGCu------UCUGCuuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 16180 0.78 0.631543
Target:  5'- cCGaCGUCGAAGAagccaguuCGAGGACcGCGGGCGa -3'
miRNA:   3'- -GC-GCAGCUUCU--------GCUUCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 17014 0.69 0.968252
Target:  5'- cCGcCGUCuccggaggaGggGACGcucgGAGGgGACGGACGg -3'
miRNA:   3'- -GC-GCAG---------CuuCUGC----UUCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 17898 0.69 0.965201
Target:  5'- gGCGgCGgcGGCcccGAGGACGACGGcCGc -3'
miRNA:   3'- gCGCaGCuuCUG---CUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 18675 0.75 0.775961
Target:  5'- -uCGUCGGAGAgGAagagcucguGGGCGGCGGGCa -3'
miRNA:   3'- gcGCAGCUUCUgCU---------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 19678 0.66 0.994309
Target:  5'- cCGCGUCuccgucucGGACGAucAGACGGuCgGGACGc -3'
miRNA:   3'- -GCGCAGcu------UCUGCU--UCUGCU-G-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 21063 0.69 0.965201
Target:  5'- gCGCGU-GAGGGCGcacGGGCGGCGGuCc -3'
miRNA:   3'- -GCGCAgCUUCUGCu--UCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 21235 0.73 0.851422
Target:  5'- cCGgGgCGGAGACGggGGCGGagaGGGCu -3'
miRNA:   3'- -GCgCaGCUUCUGCuuCUGCUg--CCUGc -5'
9131 5' -53.1 NC_002512.2 + 22394 0.72 0.906096
Target:  5'- uCGCGgaucCGGAGACGGgcgccgAGACGAgcgacuCGGACGc -3'
miRNA:   3'- -GCGCa---GCUUCUGCU------UCUGCU------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 24262 0.67 0.989081
Target:  5'- cCGCGggcaGGaaGGACGgcGGCGACGGcaucccGCGg -3'
miRNA:   3'- -GCGCag--CU--UCUGCuuCUGCUGCC------UGC- -5'
9131 5' -53.1 NC_002512.2 + 24703 0.74 0.819453
Target:  5'- -uCGUCGAGGACGcGGGCGAgGGAg- -3'
miRNA:   3'- gcGCAGCUUCUGCuUCUGCUgCCUgc -5'
9131 5' -53.1 NC_002512.2 + 24765 0.73 0.85747
Target:  5'- -cCGUCGGAGACGAAGACccgcucgggucCGGGCGc -3'
miRNA:   3'- gcGCAGCUUCUGCUUCUGcu---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 25569 0.66 0.994309
Target:  5'- gGCgGUUGAGGGCGAcGACcaGCGGAUc -3'
miRNA:   3'- gCG-CAGCUUCUGCUuCUGc-UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 26225 0.67 0.986159
Target:  5'- gGCGaCGGAGACG-GGACcgguAUGGACGu -3'
miRNA:   3'- gCGCaGCUUCUGCuUCUGc---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 26338 0.7 0.942542
Target:  5'- gGCGagGGAcGCGGAGACGGCGG-UGa -3'
miRNA:   3'- gCGCagCUUcUGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 27522 0.74 0.835785
Target:  5'- aGCGUCGGAGGCGGcucAGAccaauCGAgcCGGGCGc -3'
miRNA:   3'- gCGCAGCUUCUGCU---UCU-----GCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 27773 0.67 0.990348
Target:  5'- gGCGcCaccagcuGACGAGGACGcgguCGGACGa -3'
miRNA:   3'- gCGCaGcuu----CUGCUUCUGCu---GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.