miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 87992 1.12 0.013101
Target:  5'- cGCCCCGACGCGGAGAUUUAUAUAGACc -3'
miRNA:   3'- -CGGGGCUGCGCCUCUAAAUAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 74225 0.75 0.913931
Target:  5'- gGUCCCGACGCGGGGcgaacggccGGACg -3'
miRNA:   3'- -CGGGGCUGCGCCUCuaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 27608 0.74 0.943967
Target:  5'- cGCCCCGgucccacaGCGCGGAGAgacgcuccGGGCg -3'
miRNA:   3'- -CGGGGC--------UGCGCCUCUaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 36788 0.73 0.958861
Target:  5'- uCUCCGGCGCGGAGAUgaagc--GGCa -3'
miRNA:   3'- cGGGGCUGCGCCUCUAaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 120060 0.72 0.965508
Target:  5'- cGCCCgGcgguucgacgugaACGCGGGGucg-AUGUAGACg -3'
miRNA:   3'- -CGGGgC-------------UGCGCCUCuaaaUAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 80820 0.72 0.96899
Target:  5'- cGCCUCGGCgucgGCGGAGGggccccGUAGGCg -3'
miRNA:   3'- -CGGGGCUG----CGCCUCUaaaua-UAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 90207 0.72 0.974667
Target:  5'- cGUCCCGAUGaCGGAGGUagAUGcggucGGACa -3'
miRNA:   3'- -CGGGGCUGC-GCCUCUAaaUAUa----UCUG- -5'
9143 5' -49.2 NC_002512.2 + 141922 0.72 0.976212
Target:  5'- gGCCCCGACGgGGuGAgaauaaaAGACc -3'
miRNA:   3'- -CGGGGCUGCgCCuCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 39008 0.71 0.982321
Target:  5'- cGCCCCgcGACGCGGGGAaagccccccgcagGUAGAa -3'
miRNA:   3'- -CGGGG--CUGCGCCUCUaaaua--------UAUCUg -5'
9143 5' -49.2 NC_002512.2 + 72772 0.71 0.984981
Target:  5'- cCCCCGACGCcgGGAGGgacgucgccgGGACg -3'
miRNA:   3'- cGGGGCUGCG--CCUCUaaauaua---UCUG- -5'
9143 5' -49.2 NC_002512.2 + 146691 0.71 0.986022
Target:  5'- cGCCCCGcGCGCGGAcggcgacggAGACg -3'
miRNA:   3'- -CGGGGC-UGCGCCUcuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 18767 0.7 0.990041
Target:  5'- gGCCUCGACGCGcAGGU-----UGGACa -3'
miRNA:   3'- -CGGGGCUGCGCcUCUAaauauAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 121409 0.7 0.991275
Target:  5'- cGCgCCUGGCGUGGAGGg------AGACg -3'
miRNA:   3'- -CG-GGGCUGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 70502 0.7 0.992064
Target:  5'- cGCCCCGACGCcGcGGGAcccgcgaaugGGACg -3'
miRNA:   3'- -CGGGGCUGCG-C-CUCUaaauaua---UCUG- -5'
9143 5' -49.2 NC_002512.2 + 226759 0.7 0.992385
Target:  5'- gGCCggaCGACGCGGAGGgcga---GGACg -3'
miRNA:   3'- -CGGg--GCUGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 197184 0.7 0.992385
Target:  5'- uCUCCGACGCGGAcaacUAUGUcGACa -3'
miRNA:   3'- cGGGGCUGCGCCUcuaaAUAUAuCUG- -5'
9143 5' -49.2 NC_002512.2 + 65163 0.7 0.992385
Target:  5'- uCCUCGACGuCGGAGucgg--GUAGGCu -3'
miRNA:   3'- cGGGGCUGC-GCCUCuaaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 80853 0.69 0.995057
Target:  5'- aGCCUCggGACGCGGGGcucgGUGUcGGGCg -3'
miRNA:   3'- -CGGGG--CUGCGCCUCuaaaUAUA-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 227981 0.69 0.995057
Target:  5'- gGCCCCGGCGCcGAGGgccga--GGGCc -3'
miRNA:   3'- -CGGGGCUGCGcCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 71409 0.69 0.995622
Target:  5'- cGCCCC--CGCGGAGAUcgugcugAGGCu -3'
miRNA:   3'- -CGGGGcuGCGCCUCUAaauaua-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.