miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 4147 0.66 0.999855
Target:  5'- aCCgCCGACGCGaGGAUcgu--UGGACg -3'
miRNA:   3'- cGG-GGCUGCGCcUCUAaauauAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 4244 0.68 0.997794
Target:  5'- aGCCCCGACG-GGuGGUUcggg-GGAUa -3'
miRNA:   3'- -CGGGGCUGCgCCuCUAAauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 4974 0.67 0.999533
Target:  5'- uCCCCG-CGaCGGAGGUg-----AGACg -3'
miRNA:   3'- cGGGGCuGC-GCCUCUAaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 5549 0.66 0.999855
Target:  5'- aCCCCGGCGCGGcgccgcGGAaaaac--AGACg -3'
miRNA:   3'- cGGGGCUGCGCC------UCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 10773 0.66 0.999701
Target:  5'- gGCCCCGcCGCGGuaGGcgUaGUAgcGGCc -3'
miRNA:   3'- -CGGGGCuGCGCC--UCuaAaUAUauCUG- -5'
9143 5' -49.2 NC_002512.2 + 11395 0.66 0.999609
Target:  5'- gGCUCgGACGCGGAcGAcccgcg-GGACg -3'
miRNA:   3'- -CGGGgCUGCGCCU-CUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 11683 0.67 0.999513
Target:  5'- cGgCCCGAgGCGGGGGcccgag-GGGCg -3'
miRNA:   3'- -CgGGGCUgCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 12706 0.68 0.998717
Target:  5'- -aCCUGGCGCGGAGGgcgAUGaacccGACg -3'
miRNA:   3'- cgGGGCUGCGCCUCUaaaUAUau---CUG- -5'
9143 5' -49.2 NC_002512.2 + 14835 0.68 0.998565
Target:  5'- cGCCgCCGACGaCGGuGAgcuccucgGGACa -3'
miRNA:   3'- -CGG-GGCUGC-GCCuCUaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 18767 0.7 0.990041
Target:  5'- gGCCUCGACGCGcAGGU-----UGGACa -3'
miRNA:   3'- -CGGGGCUGCGCcUCUAaauauAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 21233 0.66 0.999701
Target:  5'- -gCCCGGgGCGGAGAcgg----GGGCg -3'
miRNA:   3'- cgGGGCUgCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 26220 0.69 0.996911
Target:  5'- aCCgUGGCGaCGGAGAcgggaccgGUAUGGACg -3'
miRNA:   3'- cGGgGCUGC-GCCUCUaaa-----UAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 27608 0.74 0.943967
Target:  5'- cGCCCCGgucccacaGCGCGGAGAgacgcuccGGGCg -3'
miRNA:   3'- -CGGGGC--------UGCGCCUCUaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 27992 0.67 0.999533
Target:  5'- aUUCCGGCGCGGGGAgacgg--AGAa -3'
miRNA:   3'- cGGGGCUGCGCCUCUaaauauaUCUg -5'
9143 5' -49.2 NC_002512.2 + 30874 0.67 0.99894
Target:  5'- uUCCUGACGCaGGAGGcc-AUcgAGACg -3'
miRNA:   3'- cGGGGCUGCG-CCUCUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 35492 0.69 0.996371
Target:  5'- cGUgCCGugGCGGAGcgUgcc--AGACa -3'
miRNA:   3'- -CGgGGCugCGCCUCuaAauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 36788 0.73 0.958861
Target:  5'- uCUCCGGCGCGGAGAUgaagc--GGCa -3'
miRNA:   3'- cGGGGCUGCGCCUCUAaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 37169 0.66 0.999701
Target:  5'- gGCCacgaCGGCgGCGGAGAagUAga-AGACg -3'
miRNA:   3'- -CGGg---GCUG-CGCCUCUaaAUauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 38447 0.67 0.999543
Target:  5'- cGCCCCGG-GCGGAGugaacau--GACu -3'
miRNA:   3'- -CGGGGCUgCGCCUCuaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 39008 0.71 0.982321
Target:  5'- cGCCCCgcGACGCGGGGAaagccccccgcagGUAGAa -3'
miRNA:   3'- -CGGGG--CUGCGCCUCUaaaua--------UAUCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.