miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 43082 0.66 0.999839
Target:  5'- gGUCCCGggGCGCGGcGAgcagcggGGACg -3'
miRNA:   3'- -CGGGGC--UGCGCCuCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 44482 0.66 0.999617
Target:  5'- cGCCCCGGggccggGCGGAGA-------AGACg -3'
miRNA:   3'- -CGGGGCUg-----CGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 48112 0.69 0.995755
Target:  5'- -aCCgGGCGCuGGAGGac-GUGUGGACg -3'
miRNA:   3'- cgGGgCUGCG-CCUCUaaaUAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 50867 0.66 0.999626
Target:  5'- -aCCCGACGuCGGAGAa------GGACa -3'
miRNA:   3'- cgGGGCUGC-GCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 52884 0.66 0.999764
Target:  5'- gGCCCUGACGCcacGAagUAcAUGGACg -3'
miRNA:   3'- -CGGGGCUGCGccuCUaaAUaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 55993 0.67 0.999533
Target:  5'- uGUCCCGACGUaucaaGGGGGUcgUUAUuc-GACg -3'
miRNA:   3'- -CGGGGCUGCG-----CCUCUA--AAUAuauCUG- -5'
9143 5' -49.2 NC_002512.2 + 56365 0.66 0.999626
Target:  5'- gGCCCCGACggacggaucgGCGGAcggcggggcGAg--GUcgAGACa -3'
miRNA:   3'- -CGGGGCUG----------CGCCU---------CUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 63273 0.68 0.998397
Target:  5'- uCCCgGACGCGGAGcccug---GGACc -3'
miRNA:   3'- cGGGgCUGCGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 65163 0.7 0.992385
Target:  5'- uCCUCGACGuCGGAGucgg--GUAGGCu -3'
miRNA:   3'- cGGGGCUGC-GCCUCuaaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 70502 0.7 0.992064
Target:  5'- cGCCCCGACGCcGcGGGAcccgcgaaugGGACg -3'
miRNA:   3'- -CGGGGCUGCG-C-CUCUaaauaua---UCUG- -5'
9143 5' -49.2 NC_002512.2 + 70842 0.66 0.999855
Target:  5'- cGCCCCGGgacgagaugcCGCGGAGAagucgUcgGUccgcccggcgcGGACg -3'
miRNA:   3'- -CGGGGCU----------GCGCCUCUaa---AuaUA-----------UCUG- -5'
9143 5' -49.2 NC_002512.2 + 71409 0.69 0.995622
Target:  5'- cGCCCC--CGCGGAGAUcgugcugAGGCu -3'
miRNA:   3'- -CGGGGcuGCGCCUCUAaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 72772 0.71 0.984981
Target:  5'- cCCCCGACGCcgGGAGGgacgucgccgGGACg -3'
miRNA:   3'- cGGGGCUGCG--CCUCUaaauaua---UCUG- -5'
9143 5' -49.2 NC_002512.2 + 74225 0.75 0.913931
Target:  5'- gGUCCCGACGCGGGGcgaacggccGGACg -3'
miRNA:   3'- -CGGGGCUGCGCCUCuaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 77189 0.67 0.999057
Target:  5'- aCCCCGAC-CGGGGAcgcgacgAGACc -3'
miRNA:   3'- cGGGGCUGcGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 80820 0.72 0.96899
Target:  5'- cGCCUCGGCgucgGCGGAGGggccccGUAGGCg -3'
miRNA:   3'- -CGGGGCUG----CGCCUCUaaaua-UAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 80853 0.69 0.995057
Target:  5'- aGCCUCggGACGCGGGGcucgGUGUcGGGCg -3'
miRNA:   3'- -CGGGG--CUGCGCCUCuaaaUAUA-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 81970 0.66 0.999795
Target:  5'- aGCCCCGG-GCGGGuGGUggcggcggGGGCg -3'
miRNA:   3'- -CGGGGCUgCGCCU-CUAaauaua--UCUG- -5'
9143 5' -49.2 NC_002512.2 + 82337 0.67 0.999533
Target:  5'- cGCCCCGGCG-GGuAGcg----GUGGGCg -3'
miRNA:   3'- -CGGGGCUGCgCC-UCuaaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 83402 0.69 0.996371
Target:  5'- uCCCCGcCGUGGGGGUUUccgugGUGGGu -3'
miRNA:   3'- cGGGGCuGCGCCUCUAAAua---UAUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.